request from: hawk checking if we should skip the build started at: Sat Oct 19 01:21:50 2019 fetching http://src.tld-linux.org/~builderti//srpms/644016c0-0c19-4ced-9d08-ac51643ed77d/R-3.6.0-3.src.rpm fetched 30463548 bytes, 203794.8 K/s installing srpm: R-3.6.0-3.src.rpm + install -d /tmp/B.i0gomc/BUILD /tmp/B.i0gomc/RPMS + LC_ALL=en_US.UTF-8 + rpm -qp --changelog R-3.6.0-3.src.rpm * Fri Oct 18 2019 TLD Linux - For complete changelog see: http://git.tld-linux.org/?p=packages/R.git;a=log;h=fb2b8ee159070ca353ca7fd4e815e5a96508db72 * Thu Oct 17 2019 Arkadiusz Miśkiewicz fb2b8ee - release 3 (by relup.sh) * Sun Oct 06 2019 Jan Rękorajski a795657 - rebuild with icu 65.1 - release 2 (by relup.sh) * Thu May 09 2019 Jakub Bogusz 34254ce - updated to 3.6.0 * Sun Apr 14 2019 Adam Gołębiowski 7ae9389 - release 2, rebuild against icu 64 * Mon Jan 21 2019 Marcin Krol 2001c6b - updated to 3.5.2, note: requires configured /etc/localtime to build + rpm -Uhv --nodeps --define '_topdir /tmp/B.i0gomc' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --without tests R-3.6.0-3.src.rpm R ################################################## + rm -f R-3.6.0-3.src.rpm + install -m 700 -d /tmp/B.i0gomc/BUILD/tmp + TMPDIR=/tmp/B.i0gomc/BUILD/tmp + exec nice -n 19 rpmbuild -bp --short-circuit --nodeps --define '_topdir /tmp/B.i0gomc' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --without tests --target i686-tld-linux --define 'prep exit 0' /tmp/B.i0gomc/R.spec Building target platforms: i686-tld-linux checking BuildConflict-ing packages no BuildConflicts found checking BR rpm: Building target platforms: i686-tld-linux no BR needed building RPM using: set -ex; : build-id: 644016c0-0c19-4ced-9d08-ac51643ed77d; TMPDIR=/tmp/B.i0gomc/BUILD/tmp exec nice -n 19 rpmbuild -bb --define '_smp_mflags -j4' --define '_tld_builder 1' --define '_topdir /tmp/B.i0gomc' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --without tests --target i686-tld-linux /tmp/B.i0gomc/R.spec + : build-id: 644016c0-0c19-4ced-9d08-ac51643ed77d + TMPDIR=/tmp/B.i0gomc/BUILD/tmp + exec nice -n 19 rpmbuild -bb --define '_smp_mflags -j4' --define '_tld_builder 1' --define '_topdir /tmp/B.i0gomc' --define '_specdir %{_topdir}' --define '_sourcedir %{_specdir}' --define '_rpmdir %{_topdir}/RPMS' --define '_builddir %{_topdir}/BUILD' --without tests --target i686-tld-linux /tmp/B.i0gomc/R.spec Building target platforms: i686-tld-linux Executing(%prep): env -i TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp /bin/sh -e /tmp/B.i0gomc/BUILD/tmp/rpm-tmp.79636 + umask 022 + cd /tmp/B.i0gomc/BUILD + cd /tmp/B.i0gomc/BUILD + rm -rf R-3.6.0 + /bin/tar -xf - + /usr/bin/gzip -dc /tmp/B.i0gomc/R-3.6.0.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd R-3.6.0 + /bin/id -u + '[' 10001 '=' 0 ']' + true . + /bin/chmod -Rf -Rf a+rX,u+w,g-w,o-w . + exit 0 Executing(%build): env -i TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp /bin/sh -e /tmp/B.i0gomc/BUILD/tmp/rpm-tmp.67694 TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp + umask 022 + cd /tmp/B.i0gomc/BUILD + cd R-3.6.0 + aclocal -I m4 + autoconf + install -d build + cd build + .././configure 'LDFLAGS=-Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc ' 'CFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 ' 'CXXFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 ' 'FFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 ' 'FCFLAGS=-O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 ' 'CPPFLAGS=' 'CC=i686-tld-linux-gcc' 'CXX=i686-tld-linux-g++' '--host=i686-tld-linux' '--build=i686-tld-linux' '--prefix=/usr' '--exec-prefix=/usr' '--bindir=/usr/bin' '--sbindir=/usr/sbin' '--sysconfdir=/etc' '--datadir=/usr/share' '--includedir=/usr/include' '--libdir=/usr/lib' '--libexecdir=/usr/lib' '--localstatedir=/var' '--sharedstatedir=/var/lib' '--mandir=/usr/share/man' '--infodir=/usr/share/info' '--x-libraries=/usr/lib' 'F77=gfortran' 'FC=gfortran' --enable-R-shlib --enable-largefile --with-internal-tzcode --with-ICU --with-blas --with-cairo --with-jpeglib --with-lapack --with-libpng --with-readline --with-recommended-packages --with-system-tre --with-tcltk '--with-tcl-config=/usr/lib/tclConfig.sh' '--with-tk-config=/usr/lib/tkConfig.sh' --with-x checking build system type... i686-tld-linux-gnu checking host system type... i686-tld-linux-gnu loading site script '.././config.site' checking for pwd... /bin/pwd checking whether builddir is srcdir... no checking whether ln -s works... yes checking for ar... ar checking for a BSD-compatible install... /usr/bin/install -c checking for sed... /bin/sed checking for which... /usr/bin/which checking for less... /usr/bin/less checking for gtar... /usr/bin/gtar checking for tex... /usr/bin/tex checking for pdftex... /usr/bin/pdftex checking for pdflatex... no configure: WARNING: you cannot build PDF versions of vignettes and help pages checking for makeindex... /usr/bin/makeindex checking for texi2any... /usr/bin/texi2any checking whether texi2any version is at least 5.1... yes checking for ginstall-info... no checking for install-info... no checking for texi2dvi... /usr/bin/texi2dvi checking for kpsewhich... /usr/bin/kpsewhich checking for latex inconsolata package... missing configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally checking for unzip... /usr/bin/unzip checking for zip... /usr/bin/zip checking for gzip... /usr/bin/gzip checking for bzip2... /usr/bin/bzip2 checking for firefox... no checking for mozilla... no checking for galeon... no checking for opera... no checking for xdg-open... no checking for kfmclient... no checking for gnome-moz-remote... no checking for open... no configure: WARNING: I could not determine a browser checking for acroread... no checking for acroread4... no checking for xdg-open... no checking for evince... no checking for xpdf... no checking for gv... no checking for gnome-gv... no checking for ggv... no checking for okular... no checking for kpdf... no checking for open... no checking for gpdf... no checking for kghostview... no configure: WARNING: I could not determine a PDF viewer checking for working aclocal... found checking for working autoconf... found checking for working autoheader... found checking for bison... bison -y checking for notangle... false checking for realpath... /usr/bin/realpath checking for i686-tld-linux-pkg-config... no checking for pkg-config... /usr/bin/pkg-config checking for i686-tld-linux-gcc... i686-tld-linux-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether i686-tld-linux-gcc accepts -g... yes checking for i686-tld-linux-gcc option to accept ISO C89... none needed checking how to run the C preprocessor... i686-tld-linux-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether i686-tld-linux-gcc needs -traditional... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking minix/config.h usability... no checking minix/config.h presence... no checking for minix/config.h... no checking whether it is safe to define __EXTENSIONS__... yes checking how to run the C preprocessor... i686-tld-linux-gcc -E looking for a modern Fortran compiler checking for i686-tld-linux-gfortran... gfortran checking whether we are using the GNU Fortran compiler... yes checking whether gfortran accepts -g... yes checking whether we are using the GNU C++ compiler... yes checking whether i686-tld-linux-g++ accepts -g... yes checking whether i686-tld-linux-g++ -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 can compile C++ code... yes checking how to run the C++ preprocessor... i686-tld-linux-g++ -E checking whether __attribute__((visibility())) is supported... yes checking whether i686-tld-linux-gcc accepts -fvisibility... yes checking whether i686-tld-linux-g++ accepts -fvisibility... yes checking whether gfortran accepts -fvisibility... yes checking for i686-tld-linux-gcc... i686-tld-linux-gcc checking whether we are using the GNU Objective C compiler... yes checking whether i686-tld-linux-gcc accepts -g... yes checking whether i686-tld-linux-g++ can compile ObjC++... no checking for Objective C++ compiler... no working ObjC++ compiler found checking how to print strings... print -r checking for a sed that does not truncate output... (cached) /bin/sed checking for fgrep... /bin/grep -F checking for ld used by i686-tld-linux-gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert i686-tld-linux-gnu file names to i686-tld-linux-gnu format... func_convert_file_noop checking how to convert i686-tld-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for i686-tld-linux-objdump... no checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for i686-tld-linux-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... print -r -- checking for i686-tld-linux-ar... (cached) ar checking for archiver @FILE support... @ checking for i686-tld-linux-strip... no checking for strip... strip checking for i686-tld-linux-ranlib... no checking for ranlib... ranlib checking for mawk... mawk checking command to parse /usr/bin/nm -B output from i686-tld-linux-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for i686-tld-linux-mt... no checking for mt... no checking if : is a manifest tool... no checking for dlfcn.h... yes checking for objdir... .libs checking if i686-tld-linux-gcc supports -fno-rtti -fno-exceptions... no checking for i686-tld-linux-gcc option to produce PIC... -fPIC -DPIC checking if i686-tld-linux-gcc PIC flag -fPIC -DPIC works... yes checking if i686-tld-linux-gcc static flag -static works... yes checking if i686-tld-linux-gcc supports -c -o file.o... yes checking if i686-tld-linux-gcc supports -c -o file.o... (cached) yes checking whether the i686-tld-linux-gcc linker (/usr/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... i686-tld-linux-g++ -E checking for ld used by i686-tld-linux-g++... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking whether the i686-tld-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes checking for i686-tld-linux-g++ option to produce PIC... -fPIC -DPIC checking if i686-tld-linux-g++ PIC flag -fPIC -DPIC works... yes checking if i686-tld-linux-g++ static flag -static works... yes checking if i686-tld-linux-g++ supports -c -o file.o... yes checking if i686-tld-linux-g++ supports -c -o file.o... (cached) yes checking whether the i686-tld-linux-g++ linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking for gfortran option to produce PIC... -fPIC checking if gfortran PIC flag -fPIC works... yes checking if gfortran static flag -static works... no checking if gfortran supports -c -o file.o... yes checking if gfortran supports -c -o file.o... (cached) yes checking whether the gfortran linker (/usr/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for cos in -lm... yes checking for sin in -lm... yes checking for dlopen in -ldl... yes checking readline/history.h usability... yes checking readline/history.h presence... yes checking for readline/history.h... yes checking readline/readline.h usability... yes checking readline/readline.h presence... yes checking for readline/readline.h... yes checking for rl_callback_read_char in -lreadline... yes checking for history_truncate_file... yes checking whether rl_callback_sigcleanup exists and is declared... yes checking whether rl_completion_matches exists and is declared... yes checking whether rl_resize_terminal exists and is declared... yes checking whether rl_sort_completion_matches exists and is declared... yes checking for ANSI C header files... (cached) yes checking for dirent.h that defines DIR... yes checking for library containing opendir... none required checking for sys/wait.h that is POSIX.1 compatible... yes checking for dlfcn.h... (cached) yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking glob.h usability... yes checking glob.h presence... yes checking for glob.h... yes checking grp.h usability... yes checking grp.h presence... yes checking for grp.h... yes checking pwd.h usability... yes checking pwd.h presence... yes checking for pwd.h... yes checking sched.h usability... yes checking sched.h presence... yes checking for sched.h... yes checking for strings.h... (cached) yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking for sys/stat.h... (cached) yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/times.h usability... yes checking sys/times.h presence... yes checking for sys/times.h... yes checking sys/utsname.h usability... yes checking sys/utsname.h presence... yes checking for sys/utsname.h... yes checking for unistd.h... (cached) yes checking utime.h usability... yes checking utime.h presence... yes checking for utime.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking elf.h usability... yes checking elf.h presence... yes checking for elf.h... yes checking features.h usability... yes checking features.h presence... yes checking for features.h... yes checking floatingpoint.h usability... no checking floatingpoint.h presence... no checking for floatingpoint.h... no checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking stdalign.h usability... yes checking stdalign.h presence... yes checking for stdalign.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking for inttypes.h... (cached) yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking stdarg.h usability... yes checking stdarg.h presence... yes checking for stdarg.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking for stdint.h... (cached) yes checking for string.h... (cached) yes checking whether setjmp.h is POSIX.1 compatible... yes checking whether sigsetjmp is declared... yes checking whether siglongjmp is declared... yes checking for GNU C library with version >= 2... yes checking return type of signal handlers... void checking for uint64_t... yes checking for int64_t... yes checking for int_fast64_t... yes checking for pid_t... yes checking for size_t... yes checking whether SIZE_MAX is declared... yes checking for blkcnt_t... yes checking for type of socket length... socklen_t * checking for stack_t... yes checking for intptr_t... yes checking for uintptr_t... yes checking whether byte ordering is bigendian... no checking for an ANSI C-conforming const... yes checking for i686-tld-linux-gcc option to accept ISO C99... none needed checking for i686-tld-linux-gcc option to accept ISO Standard C... (cached) none needed checking for inline... inline checking size of int... 4 checking size of long... 4 checking size of long long... 8 checking size of double... 8 checking size of size_t... 4 checking size of long double... 12 checking whether we can compute C Make dependencies... yes, using $(CC) -MM checking whether i686-tld-linux-gcc supports -c -o FILE.lo... yes checking for i686-tld-linux-gcc option to support OpenMP... -fopenmp checking how to get verbose linking output from gfortran... -v checking for Fortran libraries of gfortran... -L/usr/lib/gcc/i686-tld-linux/9.2.0 -L/usr/lib/gcc/i686-tld-linux/9.2.0/../../.. -lgfortran -lm -lquadmath checking how to get verbose linking output from i686-tld-linux-gcc... -v checking for C libraries of i686-tld-linux-gcc... -L/usr/lib/gcc/i686-tld-linux/9.2.0 -L/usr/lib/gcc/i686-tld-linux/9.2.0/../../.. -lgcc_s checking for dummy main to link with Fortran libraries... none checking for Fortran name-mangling scheme... lower case, underscore, no extra underscore checking whether gfortran appends underscores to external names... yes checking whether gfortran appends extra underscores to external names... no checking whether mixed C/Fortran code can be run... yes checking whether gfortran and i686-tld-linux-gcc agree on int and double... yes checking whether gfortran and i686-tld-linux-gcc agree on double complex... yes checking for gfortran option to support OpenMP... -fopenmp checking whether i686-tld-linux-g++ accepts -M for generating dependencies... yes checking whether we can compute ObjC Make dependencies... yes, using i686-tld-linux-gcc -MM checking for ObjC runtime library... -lobjc checking for ObjC runtime style... unknown checking whether i686-tld-linux-gcc accepts -fobjc-exceptions... yes checking for xmkmf... /usr/bin/xmkmf checking whether i686-tld-linux-g++ supports C++98 features with -std=gnu++98... yes checking whether i686-tld-linux-g++ supports C++11 features with -std=gnu++11... yes checking whether i686-tld-linux-g++ supports C++14 features with -std=gnu++14... yes checking whether i686-tld-linux-g++ supports C++17 features with -std=gnu++17... yes checking for i686-tld-linux-g++ -std=gnu++11 option to support OpenMP... -fopenmp checking for option providing pthread_kill... none required checking whether POSIX threads are supported... yes checking for off_t... yes checking for working alloca.h... yes checking for alloca... yes checking whether alloca is declared... yes checking whether expm1 exists and is declared... yes checking whether hypot exists and is declared... yes checking whether log1p exists and is declared... yes checking whether log1pl exists and is declared... yes checking whether log2 exists and is declared... yes checking whether log10 exists and is declared... yes checking whether nearbyint exists and is declared... yes checking whether nearbyintl exists and is declared... yes checking whether powl exists and is declared... yes checking whether rintl exists and is declared... yes checking whether va_copy exists and is declared... yes checking for isblank... yes checking sunmath.h usability... no checking sunmath.h presence... no checking for sunmath.h... no checking for cospi in -lsunmath... no checking for atanpi... no checking for atan2pi... no checking for cospi... no checking for exp10... yes checking for pown... no checking for sinpi... no checking for tanpi... no checking for __cospi... no checking for __sinpi... no checking for __tanpi... no checking for fseeko... yes checking for ftello... yes checking for matherr... no checking whether fcntl exists and is declared... yes checking whether getgrgid exists and is declared... yes checking whether getpwuid exists and is declared... yes checking whether kill exists and is declared... yes checking whether sigaction exists and is declared... yes checking whether sigaltstack exists and is declared... yes checking whether sigemptyset exists and is declared... yes checking whether fdopen exists and is declared... yes checking whether popen exists and is declared... yes checking whether getline exists and is declared... yes checking whether select exists and is declared... yes checking whether setenv exists and is declared... yes checking whether unsetenv exists and is declared... yes checking whether getrlimit exists and is declared... yes checking whether setrlimit exists and is declared... yes checking whether getrusage exists and is declared... yes checking whether getpriority exists and is declared... yes checking whether chmod exists and is declared... yes checking whether mkfifo exists and is declared... yes checking whether stat exists and is declared... yes checking whether umask exists and is declared... yes checking whether gettimeofday exists and is declared... yes checking whether utimes exists and is declared... yes checking whether times exists and is declared... yes checking whether gmtime_r exists and is declared... yes checking whether localtime_r exists and is declared... yes checking whether nl_langinfo exists and is declared... yes checking whether access exists and is declared... yes checking whether chdir exists and is declared... yes checking whether execv exists and is declared... yes checking whether ftruncate exists and is declared... yes checking whether getcwd exists and is declared... yes checking whether geteuid exists and is declared... yes checking whether getuid exists and is declared... yes checking whether link exists and is declared... yes checking whether readlink exists and is declared... yes checking whether symlink exists and is declared... yes checking whether sysconf exists and is declared... yes checking whether sched_setaffinity exists and is declared... yes checking whether sched_getaffinity exists and is declared... yes checking whether utime exists and is declared... yes checking whether utimensat exists and is declared... yes checking for clock_gettime in -lrt... yes checking whether clock_gettime exists and is declared... yes checking whether timespec_get exists and is declared... yes checking for putenv... yes checking whether putenv is declared... yes checking for vasprintf... yes checking whether vasprintf is declared... yes checking for mempcpy... yes checking for realpath... yes checking whether realpath is declared... yes checking whether glob exists and is declared... yes checking for dladdr... yes checking for dlsym... yes checking whether dladdr is declared... yes checking whether dlsym is declared... yes checking whether RTLD_DEFAULT is declared... yes checking whether RTLD_NEXT is declared... yes checking thread.h usability... no checking thread.h presence... no checking for thread.h... no checking whether thr_stksegment exists and is declared... no checking for isnan... yes checking whether isfinite is declared... yes checking whether isnan is declared... yes checking whether you have IEEE 754 floating-point arithmetic... yes checking whether putenv("FOO") can unset an environment variable... yes checking whether putenv("FOO=") can unset an environment variable... no checking for nl_langinfo and CODESET... yes checking for mkdtemp... yes checking for strdup... yes checking for strncasecmp... yes checking whether mkdtemp is declared... yes checking whether strdup is declared... yes checking whether strncasecmp is declared... yes checking for library containing connect... none required checking for library containing gethostbyname... none required checking for library containing xdr_string... none required checking for working calloc... yes checking for working isfinite... yes checking for working log1p... yes checking whether ftell works correctly on files opened for append... yes checking for working sigaction... yes checking complex.h usability... yes checking complex.h presence... yes checking for complex.h... yes checking for double complex... yes checking whether C99 double complex is supported... yes checking whether cabs exists and is declared... yes checking whether carg exists and is declared... yes checking whether cexp exists and is declared... yes checking whether clog exists and is declared... yes checking whether csqrt exists and is declared... yes checking whether cpow exists and is declared... yes checking whether ccos exists and is declared... yes checking whether csin exists and is declared... yes checking whether ctan exists and is declared... yes checking whether cacos exists and is declared... yes checking whether casin exists and is declared... yes checking whether catan exists and is declared... yes checking whether ccosh exists and is declared... yes checking whether csinh exists and is declared... yes checking whether ctanh exists and is declared... yes checking for working ctanh... yes checking whether 'struct tm' includes tm_zone... yes checking whether 'struct tm' includes tm_gmtoff... yes checking for dgemm_... no checking for sgemm_ in -lopenblas... no checking for ATL_xerbla in -latlas... no checking for dgemm_ in -lblas... yes checking for dgemm_ in -ldgemm... no checking for dgemm_ in -lblas... (cached) yes checking for dgemm_ in -lessl... no checking for dgemm_ in -lblas... 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(cached) no checking whether included gettext is requested... no checking for GNU gettext in libc... yes checking whether to use NLS... yes checking where the gettext function comes from... libc Finished configuring src/extra/intl directory checking whether OpenMP SIMD reduction is supported... yes using as R_SHELL for scripts ... /bin/sh configure: creating ./config.status config.status: creating Makeconf config.status: creating Makefile config.status: creating doc/Makefile config.status: creating doc/html/Makefile config.status: creating doc/manual/Makefile config.status: creating etc/Makefile config.status: creating etc/Makeconf config.status: creating etc/Renviron config.status: creating etc/javaconf config.status: creating etc/ldpaths config.status: creating m4/Makefile config.status: creating po/Makefile config.status: creating share/Makefile config.status: creating src/Makefile config.status: creating src/appl/Makefile config.status: creating src/extra/Makefile config.status: creating src/extra/blas/Makefile config.status: creating src/extra/intl/Makefile config.status: creating src/extra/tre/Makefile config.status: creating src/extra/tzone/Makefile config.status: creating src/extra/xdr/Makefile config.status: creating src/include/Makefile config.status: creating src/include/Rmath.h0 config.status: creating src/include/R_ext/Makefile config.status: creating src/library/Recommended/Makefile config.status: creating src/library/Makefile config.status: creating src/library/base/DESCRIPTION config.status: creating src/library/base/Makefile config.status: creating src/library/compiler/DESCRIPTION config.status: creating src/library/compiler/Makefile config.status: creating src/library/datasets/DESCRIPTION config.status: creating src/library/datasets/Makefile config.status: creating src/library/graphics/DESCRIPTION config.status: creating src/library/graphics/Makefile config.status: creating src/library/graphics/src/Makefile config.status: creating src/library/grDevices/DESCRIPTION config.status: creating src/library/grDevices/Makefile config.status: creating src/library/grDevices/src/Makefile config.status: creating src/library/grDevices/src/cairo/Makefile config.status: creating src/library/grid/DESCRIPTION config.status: creating src/library/grid/Makefile config.status: creating src/library/grid/src/Makefile config.status: creating src/library/methods/DESCRIPTION config.status: creating src/library/methods/Makefile config.status: creating src/library/methods/src/Makefile config.status: creating src/library/parallel/DESCRIPTION config.status: creating src/library/parallel/Makefile config.status: creating src/library/parallel/src/Makefile config.status: creating src/library/profile/Makefile config.status: creating src/library/stats/DESCRIPTION config.status: creating src/library/stats/Makefile config.status: creating src/library/stats/src/Makefile config.status: creating src/library/stats4/DESCRIPTION config.status: creating src/library/stats4/Makefile config.status: creating src/library/splines/DESCRIPTION config.status: creating src/library/splines/Makefile config.status: creating src/library/splines/src/Makefile config.status: creating src/library/tcltk/DESCRIPTION config.status: creating src/library/tcltk/Makefile config.status: creating src/library/tcltk/src/Makefile config.status: creating src/library/tools/DESCRIPTION config.status: creating src/library/tools/Makefile config.status: creating src/library/tools/src/Makefile config.status: creating src/library/translations/DESCRIPTION config.status: creating src/library/translations/Makefile config.status: creating src/library/utils/DESCRIPTION config.status: creating src/library/utils/Makefile config.status: creating src/library/utils/src/Makefile config.status: creating src/main/Makefile config.status: creating src/modules/Makefile config.status: creating src/modules/X11/Makefile config.status: creating src/modules/internet/Makefile config.status: creating src/modules/lapack/Makefile config.status: creating src/nmath/Makefile config.status: creating src/nmath/standalone/Makefile config.status: creating src/scripts/Makefile config.status: creating src/scripts/R.sh config.status: creating src/scripts/Rcmd config.status: creating src/scripts/javareconf config.status: creating src/scripts/mkinstalldirs config.status: creating src/scripts/pager config.status: creating src/scripts/rtags config.status: creating src/unix/Makefile config.status: creating tests/Makefile config.status: creating tests/Embedding/Makefile config.status: creating tests/Examples/Makefile config.status: creating tools/Makefile config.status: creating src/include/config.h config.status: executing libtool commands config.status: executing stamp-h commands R is now configured for i686-tld-linux-gnu Source directory: ../. Installation directory: /usr C compiler: i686-tld-linux-gcc -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 Fortran fixed-form compiler: gfortran -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 Default C++ compiler: i686-tld-linux-g++ -std=gnu++11 -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 C++98 compiler: i686-tld-linux-g++ -std=gnu++98 -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 C++11 compiler: i686-tld-linux-g++ -std=gnu++11 -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 C++14 compiler: i686-tld-linux-g++ -std=gnu++14 -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 C++17 compiler: i686-tld-linux-g++ -std=gnu++17 -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 Fortran free-form compiler: gfortran -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 Obj-C compiler: i686-tld-linux-gcc -g -O2 -fobjc-exceptions Interfaces supported: X11, tcltk External libraries: readline, BLAS(generic), LAPACK(generic), curl Additional capabilities: PNG, JPEG, TIFF, NLS, cairo, ICU Options enabled: shared R library, R profiling Capabilities skipped: Options not enabled: shared BLAS, memory profiling Recommended packages: yes configure: WARNING: you cannot build PDF versions of vignettes and help pages configure: WARNING: neither inconsolata.sty nor zi4.sty found: PDF vignettes and package manuals will not be rendered optimally configure: WARNING: I could not determine a browser configure: WARNING: I could not determine a PDF viewer + /usr/bin/make -j4 -j1 make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/m4' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tools' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' mkdir -p -- ../share/R mkdir -p -- ../share/dictionaries mkdir -p -- ../share/encodings mkdir -p -- ../share/java mkdir -p -- ../share/licenses mkdir -p -- ../share/make mkdir -p -- ../share/Rd mkdir -p -- ../share/Rd/macros mkdir -p -- ../share/sh mkdir -p -- ../share/texmf mkdir -p -- ../share/texmf/bibtex/bib mkdir -p -- ../share/texmf/bibtex/bst mkdir -p -- ../share/texmf/tex/latex make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' mkdir -p -- ../../bin make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include' mkdir -p -- ../../include make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include/R_ext' mkdir -p -- ../../../include/R_ext make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include/R_ext' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' making regcomp.d from ../../../.././src/extra/tre/regcomp.c making regerror.d from ../../../.././src/extra/tre/regerror.c making regexec.d from ../../../.././src/extra/tre/regexec.c making tre-ast.d from ../../../.././src/extra/tre/tre-ast.c making tre-compile.d from ../../../.././src/extra/tre/tre-compile.c making tre-match-approx.d from ../../../.././src/extra/tre/tre-match-approx.c making tre-match-backtrack.d from ../../../.././src/extra/tre/tre-match-backtrack.c making tre-match-parallel.d from ../../../.././src/extra/tre/tre-match-parallel.c making tre-mem.d from ../../../.././src/extra/tre/tre-mem.c making tre-parse.d from ../../../.././src/extra/tre/tre-parse.c making tre-stack.d from ../../../.././src/extra/tre/tre-stack.c making xmalloc.d from ../../../.././src/extra/tre/xmalloc.c make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/regcomp.c -o regcomp.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/regerror.c -o regerror.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/regexec.c -o regexec.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-ast.c -o tre-ast.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-compile.c -o tre-compile.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-match-approx.c -o tre-match-approx.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-match-backtrack.c -o tre-match-backtrack.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-match-parallel.c -o tre-match-parallel.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-mem.c -o tre-mem.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-parse.c -o tre-parse.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/tre-stack.c -o tre-stack.o i686-tld-linux-gcc -I../../../.././src/extra/tre -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tre/xmalloc.c -o xmalloc.o ar -cr libtre.a regcomp.o regerror.o regexec.o tre-ast.o tre-compile.o tre-match-approx.o tre-match-backtrack.o tre-match-parallel.o tre-mem.o tre-parse.o tre-stack.o xmalloc.o ranlib libtre.a make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' making localtime.d from ../../../.././src/extra/tzone/localtime.c making strftime.d from ../../../.././src/extra/tzone/strftime.c make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -I../../../.././src/extra/tzone -I../../../.././src/main -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tzone/localtime.c -o localtime.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -I../../../.././src/extra/tzone -I../../../.././src/main -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/extra/tzone/strftime.c -o strftime.o ar -cr libtz.a localtime.o strftime.o make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' making integrate.d from ../../.././src/appl/integrate.c making interv.d from ../../.././src/appl/interv.c making maxcol.d from ../../.././src/appl/maxcol.c making optim.d from ../../.././src/appl/optim.c making pretty.d from ../../.././src/appl/pretty.c making uncmin.d from ../../.././src/appl/uncmin.c make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/integrate.c -o integrate.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/interv.c -o interv.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/maxcol.c -o maxcol.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/optim.c -o optim.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/pretty.c -o pretty.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/uncmin.c -o uncmin.o gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dchdc.f -o dchdc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dpbfa.f -o dpbfa.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dpbsl.f -o dpbsl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dpoco.f -o dpoco.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dpodi.f -o dpodi.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dpofa.f -o dpofa.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dposl.f -o dposl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dqrdc.f -o dqrdc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dqrdc2.f -o dqrdc2.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dqrls.f -o dqrls.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dqrsl.f -o dqrsl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dqrutl.f -o dqrutl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dsvdc.f -o dsvdc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dtrco.f -o dtrco.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/appl/dtrsl.f -o dtrsl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran ar -cr libappl.a integrate.o interv.o maxcol.o optim.o pretty.o uncmin.o dchdc.o dpbfa.o dpbsl.o dpoco.o dpodi.o dpofa.o dposl.o dqrdc.o dqrdc2.o dqrls.o dqrsl.o dqrutl.o dsvdc.o dtrco.o dtrsl.o ranlib libappl.a make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' making mlutils.d from ../../.././src/nmath/mlutils.c making d1mach.d from ../../.././src/nmath/d1mach.c making i1mach.d from ../../.././src/nmath/i1mach.c making fmax2.d from ../../.././src/nmath/fmax2.c making fmin2.d from ../../.././src/nmath/fmin2.c making fprec.d from ../../.././src/nmath/fprec.c making fround.d from ../../.././src/nmath/fround.c making ftrunc.d from ../../.././src/nmath/ftrunc.c making sign.d from ../../.././src/nmath/sign.c making fsign.d from ../../.././src/nmath/fsign.c making imax2.d from ../../.././src/nmath/imax2.c making imin2.d from ../../.././src/nmath/imin2.c making chebyshev.d from ../../.././src/nmath/chebyshev.c making log1p.d from ../../.././src/nmath/log1p.c making lgammacor.d from ../../.././src/nmath/lgammacor.c making gammalims.d from ../../.././src/nmath/gammalims.c making stirlerr.d from ../../.././src/nmath/stirlerr.c making bd0.d from ../../.././src/nmath/bd0.c making gamma.d from ../../.././src/nmath/gamma.c making lgamma.d from ../../.././src/nmath/lgamma.c making gamma_cody.d from ../../.././src/nmath/gamma_cody.c making beta.d from ../../.././src/nmath/beta.c making lbeta.d from ../../.././src/nmath/lbeta.c making polygamma.d from ../../.././src/nmath/polygamma.c making cospi.d from ../../.././src/nmath/cospi.c making bessel_i.d from ../../.././src/nmath/bessel_i.c making bessel_j.d from ../../.././src/nmath/bessel_j.c making bessel_k.d from ../../.././src/nmath/bessel_k.c making bessel_y.d from ../../.././src/nmath/bessel_y.c making choose.d from ../../.././src/nmath/choose.c making snorm.d from ../../.././src/nmath/snorm.c making sexp.d from ../../.././src/nmath/sexp.c making dgamma.d from ../../.././src/nmath/dgamma.c making pgamma.d from ../../.././src/nmath/pgamma.c making qgamma.d from ../../.././src/nmath/qgamma.c making rgamma.d from ../../.././src/nmath/rgamma.c making dbeta.d from ../../.././src/nmath/dbeta.c making pbeta.d from ../../.././src/nmath/pbeta.c making qbeta.d from ../../.././src/nmath/qbeta.c making rbeta.d from ../../.././src/nmath/rbeta.c making dunif.d from ../../.././src/nmath/dunif.c making punif.d from ../../.././src/nmath/punif.c making qunif.d from ../../.././src/nmath/qunif.c making runif.d from ../../.././src/nmath/runif.c making dnorm.d from ../../.././src/nmath/dnorm.c making pnorm.d from ../../.././src/nmath/pnorm.c making qnorm.d from ../../.././src/nmath/qnorm.c making rnorm.d from ../../.././src/nmath/rnorm.c making dlnorm.d from ../../.././src/nmath/dlnorm.c making plnorm.d from ../../.././src/nmath/plnorm.c making qlnorm.d from ../../.././src/nmath/qlnorm.c making rlnorm.d from ../../.././src/nmath/rlnorm.c making df.d from ../../.././src/nmath/df.c making pf.d from ../../.././src/nmath/pf.c making qf.d from ../../.././src/nmath/qf.c making rf.d from ../../.././src/nmath/rf.c making dnf.d from ../../.././src/nmath/dnf.c making dt.d from ../../.././src/nmath/dt.c making pt.d from ../../.././src/nmath/pt.c making qt.d from ../../.././src/nmath/qt.c making rt.d from ../../.././src/nmath/rt.c making dnt.d from ../../.././src/nmath/dnt.c making dchisq.d from ../../.././src/nmath/dchisq.c making pchisq.d from ../../.././src/nmath/pchisq.c making qchisq.d from ../../.././src/nmath/qchisq.c making rchisq.d from ../../.././src/nmath/rchisq.c making rnchisq.d from ../../.././src/nmath/rnchisq.c making dbinom.d from ../../.././src/nmath/dbinom.c making pbinom.d from ../../.././src/nmath/pbinom.c making qbinom.d from ../../.././src/nmath/qbinom.c making rbinom.d from ../../.././src/nmath/rbinom.c making rmultinom.d from ../../.././src/nmath/rmultinom.c making dcauchy.d from ../../.././src/nmath/dcauchy.c making pcauchy.d from ../../.././src/nmath/pcauchy.c making qcauchy.d from ../../.././src/nmath/qcauchy.c making rcauchy.d from ../../.././src/nmath/rcauchy.c making dexp.d from ../../.././src/nmath/dexp.c making pexp.d from ../../.././src/nmath/pexp.c making qexp.d from ../../.././src/nmath/qexp.c making rexp.d from ../../.././src/nmath/rexp.c making dgeom.d from ../../.././src/nmath/dgeom.c making pgeom.d from ../../.././src/nmath/pgeom.c making qgeom.d from ../../.././src/nmath/qgeom.c making rgeom.d from ../../.././src/nmath/rgeom.c making dhyper.d from ../../.././src/nmath/dhyper.c making phyper.d from ../../.././src/nmath/phyper.c making qhyper.d from ../../.././src/nmath/qhyper.c making rhyper.d from ../../.././src/nmath/rhyper.c making dnbinom.d from ../../.././src/nmath/dnbinom.c making pnbinom.d from ../../.././src/nmath/pnbinom.c making qnbinom.d from ../../.././src/nmath/qnbinom.c making rnbinom.d from ../../.././src/nmath/rnbinom.c making dpois.d from ../../.././src/nmath/dpois.c making ppois.d from ../../.././src/nmath/ppois.c making qpois.d from ../../.././src/nmath/qpois.c making rpois.d from ../../.././src/nmath/rpois.c making dweibull.d from ../../.././src/nmath/dweibull.c making pweibull.d from ../../.././src/nmath/pweibull.c making qweibull.d from ../../.././src/nmath/qweibull.c making rweibull.d from ../../.././src/nmath/rweibull.c making dlogis.d from ../../.././src/nmath/dlogis.c making plogis.d from ../../.././src/nmath/plogis.c making qlogis.d from ../../.././src/nmath/qlogis.c making rlogis.d from ../../.././src/nmath/rlogis.c making dnchisq.d from ../../.././src/nmath/dnchisq.c making pnchisq.d from ../../.././src/nmath/pnchisq.c making qnchisq.d from ../../.././src/nmath/qnchisq.c making dnbeta.d from ../../.././src/nmath/dnbeta.c making pnbeta.d from ../../.././src/nmath/pnbeta.c making qnbeta.d from ../../.././src/nmath/qnbeta.c making pnf.d from ../../.././src/nmath/pnf.c making pnt.d from ../../.././src/nmath/pnt.c making qnf.d from ../../.././src/nmath/qnf.c making qnt.d from ../../.././src/nmath/qnt.c making ptukey.d from ../../.././src/nmath/ptukey.c making qtukey.d from ../../.././src/nmath/qtukey.c making toms708.d from ../../.././src/nmath/toms708.c making wilcox.d from ../../.././src/nmath/wilcox.c making signrank.d from ../../.././src/nmath/signrank.c make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/mlutils.c -o mlutils.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/d1mach.c -o d1mach.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/i1mach.c -o i1mach.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/fmax2.c -o fmax2.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/fmin2.c -o fmin2.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/fprec.c -o fprec.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/fround.c -o fround.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/ftrunc.c -o ftrunc.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/sign.c -o sign.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/fsign.c -o fsign.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/imax2.c -o imax2.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/imin2.c -o imin2.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/chebyshev.c -o chebyshev.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/log1p.c -o log1p.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/lgammacor.c -o lgammacor.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/gammalims.c -o gammalims.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/stirlerr.c -o stirlerr.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/bd0.c -o bd0.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/gamma.c -o gamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/lgamma.c -o lgamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/gamma_cody.c -o gamma_cody.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/beta.c -o beta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/lbeta.c -o lbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/polygamma.c -o polygamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/cospi.c -o cospi.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/bessel_i.c -o bessel_i.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/bessel_j.c -o bessel_j.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/bessel_k.c -o bessel_k.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/bessel_y.c -o bessel_y.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/choose.c -o choose.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/snorm.c -o snorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/sexp.c -o sexp.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dgamma.c -o dgamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pgamma.c -o pgamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qgamma.c -o qgamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rgamma.c -o rgamma.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dbeta.c -o dbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pbeta.c -o pbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qbeta.c -o qbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rbeta.c -o rbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dunif.c -o dunif.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/punif.c -o punif.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qunif.c -o qunif.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/runif.c -o runif.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dnorm.c -o dnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pnorm.c -o pnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qnorm.c -o qnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rnorm.c -o rnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dlnorm.c -o dlnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/plnorm.c -o plnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qlnorm.c -o qlnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rlnorm.c -o rlnorm.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/df.c -o df.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pf.c -o pf.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qf.c -o qf.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rf.c -o rf.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dnf.c -o dnf.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dt.c -o dt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pt.c -o pt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qt.c -o qt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rt.c -o rt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dnt.c -o dnt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dchisq.c -o dchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pchisq.c -o pchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qchisq.c -o qchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rchisq.c -o rchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rnchisq.c -o rnchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dbinom.c -o dbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pbinom.c -o pbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qbinom.c -o qbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rbinom.c -o rbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rmultinom.c -o rmultinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dcauchy.c -o dcauchy.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pcauchy.c -o pcauchy.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qcauchy.c -o qcauchy.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rcauchy.c -o rcauchy.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dexp.c -o dexp.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pexp.c -o pexp.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qexp.c -o qexp.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rexp.c -o rexp.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dgeom.c -o dgeom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pgeom.c -o pgeom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qgeom.c -o qgeom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rgeom.c -o rgeom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dhyper.c -o dhyper.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/phyper.c -o phyper.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qhyper.c -o qhyper.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rhyper.c -o rhyper.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dnbinom.c -o dnbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pnbinom.c -o pnbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qnbinom.c -o qnbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rnbinom.c -o rnbinom.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dpois.c -o dpois.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/ppois.c -o ppois.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qpois.c -o qpois.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rpois.c -o rpois.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dweibull.c -o dweibull.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pweibull.c -o pweibull.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qweibull.c -o qweibull.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rweibull.c -o rweibull.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dlogis.c -o dlogis.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/plogis.c -o plogis.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qlogis.c -o qlogis.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/rlogis.c -o rlogis.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dnchisq.c -o dnchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pnchisq.c -o pnchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qnchisq.c -o qnchisq.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/dnbeta.c -o dnbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pnbeta.c -o pnbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qnbeta.c -o qnbeta.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pnf.c -o pnf.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/pnt.c -o pnt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qnf.c -o qnf.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qnt.c -o qnt.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/ptukey.c -o ptukey.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/qtukey.c -o qtukey.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/toms708.c -o toms708.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/wilcox.c -o wilcox.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/nmath/signrank.c -o signrank.o ar -cr libnmath.a mlutils.o d1mach.o i1mach.o fmax2.o fmin2.o fprec.o fround.o ftrunc.o sign.o fsign.o imax2.o imin2.o chebyshev.o log1p.o lgammacor.o gammalims.o stirlerr.o bd0.o gamma.o lgamma.o gamma_cody.o beta.o lbeta.o polygamma.o cospi.o bessel_i.o bessel_j.o bessel_k.o bessel_y.o choose.o snorm.o sexp.o dgamma.o pgamma.o qgamma.o rgamma.o dbeta.o pbeta.o qbeta.o rbeta.o dunif.o punif.o qunif.o runif.o dnorm.o pnorm.o qnorm.o rnorm.o dlnorm.o plnorm.o qlnorm.o rlnorm.o df.o pf.o qf.o rf.o dnf.o dt.o pt.o qt.o rt.o dnt.o dchisq.o pchisq.o qchisq.o rchisq.o rnchisq.o dbinom.o pbinom.o qbinom.o rbinom.o rmultinom.o dcauchy.o pcauchy.o qcauchy.o rcauchy.o dexp.o pexp.o qexp.o rexp.o dgeom.o pgeom.o qgeom.o rgeom.o dhyper.o phyper.o qhyper.o rhyper.o dnbinom.o pnbinom.o qnbinom.o rnbinom.o dpois.o ppois.o qpois.o rpois.o dweibull.o pweibull.o qweibull.o rweibull.o dlogis.o plogis.o qlogis.o rlogis.o dnchisq.o pnchisq.o qnchisq.o dnbeta.o pnbeta.o qnbeta.o pnf.o pnt.o qnf.o qnt.o ptukey.o qtukey.o toms708.o wilcox.o signrank.o ranlib libnmath.a make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' config.status: creating src/unix/Makefile making Rembedded.d from ../../.././src/unix/Rembedded.c making dynload.d from ../../.././src/unix/dynload.c making system.d from ../../.././src/unix/system.c making sys-unix.d from ../../.././src/unix/sys-unix.c making sys-std.d from ../../.././src/unix/sys-std.c making X11.d from ../../.././src/unix/X11.c make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/unix/Rembedded.c -o Rembedded.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/unix/dynload.c -o dynload.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/unix/system.c -o system.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/unix/sys-unix.c -o sys-unix.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/unix/sys-std.c -o sys-std.o i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/unix/X11.c -o X11.o ar -cr libunix.a Rembedded.o dynload.o system.o sys-unix.o sys-std.o X11.o ranlib libunix.a make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -DR_HOME='"/tmp/B.i0gomc/BUILD/R-3.6.0/build"' \ -o Rscript ../../.././src/unix/Rscript.c make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' config.status: creating src/main/Makefile making CommandLineArgs.d from ../../.././src/main/CommandLineArgs.c making Rdynload.d from ../../.././src/main/Rdynload.c making Renviron.d from ../../.././src/main/Renviron.c making RNG.d from ../../.././src/main/RNG.c making agrep.d from ../../.././src/main/agrep.c making altclasses.d from ../../.././src/main/altclasses.c making altrep.d from ../../.././src/main/altrep.c making apply.d from ../../.././src/main/apply.c making arithmetic.d from ../../.././src/main/arithmetic.c making array.d from ../../.././src/main/array.c making attrib.d from ../../.././src/main/attrib.c making bind.d from ../../.././src/main/bind.c making builtin.d from ../../.././src/main/builtin.c making character.d from ../../.././src/main/character.c making coerce.d from ../../.././src/main/coerce.c making colors.d from ../../.././src/main/colors.c making complex.d from ../../.././src/main/complex.c making connections.d from ../../.././src/main/connections.c making context.d from ../../.././src/main/context.c making cum.d from ../../.././src/main/cum.c making dcf.d from ../../.././src/main/dcf.c making datetime.d from ../../.././src/main/datetime.c making debug.d from ../../.././src/main/debug.c making deparse.d from ../../.././src/main/deparse.c making devices.d from ../../.././src/main/devices.c making dotcode.d from ../../.././src/main/dotcode.c making dounzip.d from ../../.././src/main/dounzip.c making dstruct.d from ../../.././src/main/dstruct.c making duplicate.d from ../../.././src/main/duplicate.c making edit.d from ../../.././src/main/edit.c making engine.d from ../../.././src/main/engine.c making envir.d from ../../.././src/main/envir.c making errors.d from ../../.././src/main/errors.c making eval.d from ../../.././src/main/eval.c making format.d from ../../.././src/main/format.c making gevents.d from ../../.././src/main/gevents.c making gram.d from ../../.././src/main/gram.c making gram-ex.d from ../../.././src/main/gram-ex.c making graphics.d from ../../.././src/main/graphics.c making grep.d from ../../.././src/main/grep.c making identical.d from ../../.././src/main/identical.c making inlined.d from ../../.././src/main/inlined.c making inspect.d from ../../.././src/main/inspect.c making internet.d from ../../.././src/main/internet.c making iosupport.d from ../../.././src/main/iosupport.c making lapack.d from ../../.././src/main/lapack.c making list.d from ../../.././src/main/list.c making localecharset.d from ../../.././src/main/localecharset.c making logic.d from ../../.././src/main/logic.c making main.d from ../../.././src/main/main.c making mapply.d from ../../.././src/main/mapply.c making match.d from ../../.././src/main/match.c making memory.d from ../../.././src/main/memory.c making names.d from ../../.././src/main/names.c making objects.d from ../../.././src/main/objects.c making options.d from ../../.././src/main/options.c making paste.d from ../../.././src/main/paste.c making platform.d from ../../.././src/main/platform.c making plot.d from ../../.././src/main/plot.c making plot3d.d from ../../.././src/main/plot3d.c making plotmath.d from ../../.././src/main/plotmath.c making print.d from ../../.././src/main/print.c making printarray.d from ../../.././src/main/printarray.c making printvector.d from ../../.././src/main/printvector.c making printutils.d from ../../.././src/main/printutils.c making qsort.d from ../../.././src/main/qsort.c making radixsort.d from ../../.././src/main/radixsort.c making random.d from ../../.././src/main/random.c making raw.d from ../../.././src/main/raw.c making registration.d from ../../.././src/main/registration.c making relop.d from ../../.././src/main/relop.c making rlocale.d from ../../.././src/main/rlocale.c making saveload.d from ../../.././src/main/saveload.c making scan.d from ../../.././src/main/scan.c making seq.d from ../../.././src/main/seq.c making serialize.d from ../../.././src/main/serialize.c making sort.d from ../../.././src/main/sort.c making source.d from ../../.././src/main/source.c making split.d from ../../.././src/main/split.c making sprintf.d from ../../.././src/main/sprintf.c making startup.d from ../../.././src/main/startup.c making subassign.d from ../../.././src/main/subassign.c making subscript.d from ../../.././src/main/subscript.c making subset.d from ../../.././src/main/subset.c making summary.d from ../../.././src/main/summary.c making sysutils.d from ../../.././src/main/sysutils.c making times.d from ../../.././src/main/times.c making unique.d from ../../.././src/main/unique.c making util.d from ../../.././src/main/util.c making version.d from ../../.././src/main/version.c making g_alab_her.d from ../../.././src/main/g_alab_her.c making g_cntrlify.d from ../../.././src/main/g_cntrlify.c making g_fontdb.d from ../../.././src/main/g_fontdb.c making g_her_glyph.d from ../../.././src/main/g_her_glyph.c making Rmain.d from ../../.././src/main/Rmain.c making alloca.d from ../../.././src/main/alloca.c making mkdtemp.d from ../../.././src/main/mkdtemp.c making strdup.d from ../../.././src/main/strdup.c making strncasecmp.d from ../../.././src/main/strncasecmp.c make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/CommandLineArgs.c -o CommandLineArgs.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/Rdynload.c -o Rdynload.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/Renviron.c -o Renviron.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/RNG.c -o RNG.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/agrep.c -o agrep.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/altclasses.c -o altclasses.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/altrep.c -o altrep.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/apply.c -o apply.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/arithmetic.c -o arithmetic.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/array.c -o array.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/attrib.c -o attrib.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/bind.c -o bind.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/builtin.c -o builtin.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/character.c -o character.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/coerce.c -o coerce.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/colors.c -o colors.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/complex.c -o complex.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/connections.c -o connections.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/context.c -o context.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/cum.c -o cum.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/dcf.c -o dcf.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/datetime.c -o datetime.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/debug.c -o debug.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/deparse.c -o deparse.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/devices.c -o devices.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/dotcode.c -o dotcode.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/dounzip.c -o dounzip.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/dstruct.c -o dstruct.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/duplicate.c -o duplicate.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/edit.c -o edit.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/engine.c -o engine.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/envir.c -o envir.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/errors.c -o errors.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/eval.c -o eval.o In file included from /usr/include/string.h:494, from ../../.././src/include/Rinlinedfuns.h:73, from ../../.././src/include/Rinternals.h:1550, from ../../.././src/include/Defn.h:81, from ../../.././src/main/eval.c:27: In function 'strncpy', inlined from 'inflateAssignmentCall' at ../../.././src/main/eval.c:6083:5, inlined from 'R_getBCInterpreterExpression' at ../../.././src/main/eval.c:6136:8: /usr/include/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../../.././src/main/eval.c: In function 'R_getBCInterpreterExpression': ../../.././src/main/eval.c:6076:19: note: length computed here 6076 | size_t slen = strlen(name); | ^~~~~~~~~~~~ i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/format.c -o format.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/gevents.c -o gevents.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/gram.c -o gram.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/gram-ex.c -o gram-ex.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/graphics.c -o graphics.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/grep.c -o grep.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/identical.c -o identical.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/inlined.c -o inlined.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/inspect.c -o inspect.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/internet.c -o internet.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/iosupport.c -o iosupport.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/lapack.c -o lapack.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/list.c -o list.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/localecharset.c -o localecharset.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/logic.c -o logic.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/main.c -o main.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/mapply.c -o mapply.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/match.c -o match.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/memory.c -o memory.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/names.c -o names.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/objects.c -o objects.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/options.c -o options.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/paste.c -o paste.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/platform.c -o platform.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/plot.c -o plot.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/plot3d.c -o plot3d.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/plotmath.c -o plotmath.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/print.c -o print.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/printarray.c -o printarray.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/printvector.c -o printvector.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/printutils.c -o printutils.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/qsort.c -o qsort.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/radixsort.c -o radixsort.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/random.c -o random.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/raw.c -o raw.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/registration.c -o registration.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/relop.c -o relop.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/rlocale.c -o rlocale.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/saveload.c -o saveload.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/scan.c -o scan.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/seq.c -o seq.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/serialize.c -o serialize.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/sort.c -o sort.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/source.c -o source.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/split.c -o split.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/sprintf.c -o sprintf.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/startup.c -o startup.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/subassign.c -o subassign.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/subscript.c -o subscript.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/subset.c -o subset.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/summary.c -o summary.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/sysutils.c -o sysutils.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/times.c -o times.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/unique.c -o unique.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/util.c -o util.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/version.c -o version.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/g_alab_her.c -o g_alab_her.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/g_cntrlify.c -o g_cntrlify.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/g_fontdb.c -o g_fontdb.o i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/g_her_glyph.c -o g_her_glyph.o gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/xxxpr.f -o xxxpr.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -shared -fopenmp -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/tzone/libtz.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre2-8 -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' mkdir -p -- /tmp/B.i0gomc/BUILD/R-3.6.0/build/bin/exec mkdir -p -- /tmp/B.i0gomc/BUILD/R-3.6.0/build/lib make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/Rmain.c -o Rmain.o i686-tld-linux-gcc -Wl,--export-dynamic -fopenmp -L"../../lib" -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o R.bin Rmain.o -lR make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' making Rhttpd.d from ../../../.././src/modules/internet/Rhttpd.c making Rsock.d from ../../../.././src/modules/internet/Rsock.c making internet.d from ../../../.././src/modules/internet/internet.c making libcurl.d from ../../../.././src/modules/internet/libcurl.c making nanoftp.d from ../../../.././src/modules/internet/nanoftp.c making nanohttp.d from ../../../.././src/modules/internet/nanohttp.c making sock.d from ../../../.././src/modules/internet/sock.c making sockconn.d from ../../../.././src/modules/internet/sockconn.c make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/Rhttpd.c -o Rhttpd.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/Rsock.c -o Rsock.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/internet.c -o internet.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/libcurl.c -o libcurl.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/nanoftp.c -o nanoftp.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/nanohttp.c -o nanohttp.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/sock.c -o sock.o i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -fvisibility=hidden -c ../../../.././src/modules/internet/sockconn.c -o sockconn.o i686-tld-linux-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o internet.so Rhttpd.o Rsock.o internet.o libcurl.o nanoftp.o nanohttp.o sock.o sockconn.o -lcurl -lcares -lnghttp2 -lidn2 -lrtmp -lz -lssl -lcrypto -lssh2 -lssh2 -lpsl -lssl -lcrypto -lssl -lcrypto -lgssapi -lldap -llber -lbrotlidec -lz -lR make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' mkdir -p -- /tmp/B.i0gomc/BUILD/R-3.6.0/build/modules make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' making Lapack.d from ../../../.././src/modules/lapack/Lapack.c make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' i686-tld-linux-gcc -I. -I../../../src/include -I../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../.././src/modules/lapack/Lapack.c -o Lapack.o i686-tld-linux-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o lapack.so Lapack.o -lR -llapack -lblas -lgfortran -lm -lquadmath make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' making devX11.d from ../../../.././src/modules/X11/devX11.c making rotated.d from ../../../.././src/modules/X11/rotated.c making rbitmap.d from ../../../.././src/modules/X11/rbitmap.c make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' i686-tld-linux-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../.././src/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/lib/libffi-3.2.1/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libpng16 -I../../../.././src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../.././src/modules/X11/devX11.c -o devX11.o i686-tld-linux-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../.././src/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/lib/libffi-3.2.1/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libpng16 -I../../../.././src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../.././src/modules/X11/rotated.c -o rotated.o i686-tld-linux-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../.././src/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/lib/libffi-3.2.1/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libpng16 -I../../../.././src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../.././src/modules/X11/rbitmap.c -o rbitmap.o i686-tld-linux-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o R_X11.so devX11.o rotated.o rbitmap.o -ltiff -ljpeg -lpng16 -lz -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -L/usr/lib -lX11 -lXt -lXmu -lR -lm i686-tld-linux-gcc -I/usr/include/libpng16 -I. -I../../../src/include -I../../../.././src/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/lib/libffi-3.2.1/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libpng16 -I../../../.././src/library/grDevices/src/cairo -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../.././src/modules/X11/dataentry.c -o dataentry.o i686-tld-linux-gcc -shared -L"../../../lib" -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o R_de.so dataentry.o -lSM -lICE -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -lX11 -lXext -L/usr/lib -lX11 -lXt -lXmu -lR -lm make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' mkdir -p -- ../../library make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/profile' building system startup profile mkdir -p -- ../../../library/base/R make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/profile' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' building package 'translations' mkdir -p -- ../../../library/translations make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' building package 'base' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' mkdir -p -- ../../../library/base/demo make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' building package 'tools' mkdir -p -- ../../../library/tools make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' mkdir -p -- ../../../library/tools/R make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools/src' making text.d from ../../../../.././src/library/tools/src/text.c making init.d from ../../../../.././src/library/tools/src/init.c making Rmd5.d from ../../../../.././src/library/tools/src/Rmd5.c making md5.d from ../../../../.././src/library/tools/src/md5.c making signals.d from ../../../../.././src/library/tools/src/signals.c making install.d from ../../../../.././src/library/tools/src/install.c making getfmts.d from ../../../../.././src/library/tools/src/getfmts.c making http.d from ../../../../.././src/library/tools/src/http.c making gramLatex.d from ../../../../.././src/library/tools/src/gramLatex.c making gramRd.d from ../../../../.././src/library/tools/src/gramRd.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/text.c -o text.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/Rmd5.c -o Rmd5.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/md5.c -o md5.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/signals.c -o signals.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/install.c -o install.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/getfmts.c -o getfmts.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/http.c -o http.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/gramLatex.c -o gramLatex.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tools/src/gramRd.c -o gramRd.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o tools.so text.o init.o Rmd5.o md5.o signals.o install.o getfmts.o http.o gramLatex.o gramRd.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools/src' mkdir -p -- ../../../../library/tools/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' installing 'sysdata.rda' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/compiler' building package 'compiler' mkdir -p -- ../../../library/compiler make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/compiler' mkdir -p -- ../../../library/compiler/R make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/compiler' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/compiler' byte-compiling package 'compiler' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/compiler' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/compiler' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' byte-compiling package 'base' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' byte-compiling package 'tools' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' building package 'utils' mkdir -p -- ../../../library/utils mkdir -p -- ../../../library/utils/doc make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' mkdir -p -- ../../../library/utils/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' mkdir -p -- ../../../library/utils/Sweave mkdir -p -- ../../../library/utils/misc make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' making init.d from ../../../../.././src/library/utils/src/init.c making io.d from ../../../../.././src/library/utils/src/io.c making size.d from ../../../../.././src/library/utils/src/size.c making sock.d from ../../../../.././src/library/utils/src/sock.c making stubs.d from ../../../../.././src/library/utils/src/stubs.c making utils.d from ../../../../.././src/library/utils/src/utils.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/utils/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/utils/src/io.c -o io.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/utils/src/size.c -o size.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/utils/src/sock.c -o sock.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/utils/src/stubs.c -o stubs.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/utils/src/utils.c -o utils.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o utils.so init.o io.o size.o sock.o stubs.o utils.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' mkdir -p -- ../../../../library/utils/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' installing 'sysdata.rda' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' byte-compiling package 'utils' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' building package 'grDevices' mkdir -p -- ../../../library/grDevices make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' mkdir -p -- ../../../library/grDevices/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' mkdir -p -- ../../../library/grDevices/afm mkdir -p -- ../../../library/grDevices/enc mkdir -p -- ../../../library/grDevices/icc make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' making axis_scales.d from ../../../../.././src/library/grDevices/src/axis_scales.c making chull.d from ../../../../.././src/library/grDevices/src/chull.c making devices.d from ../../../../.././src/library/grDevices/src/devices.c making init.d from ../../../../.././src/library/grDevices/src/init.c making stubs.d from ../../../../.././src/library/grDevices/src/stubs.c making colors.d from ../../../../.././src/library/grDevices/src/colors.c making devCairo.d from ../../../../.././src/library/grDevices/src/devCairo.c making devPicTeX.d from ../../../../.././src/library/grDevices/src/devPicTeX.c making devPS.d from ../../../../.././src/library/grDevices/src/devPS.c making devQuartz.d from ../../../../.././src/library/grDevices/src/devQuartz.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/axis_scales.c -o axis_scales.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/chull.c -o chull.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/devices.c -o devices.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/stubs.c -o stubs.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/colors.c -o colors.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/devCairo.c -o devCairo.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/devPicTeX.c -o devPicTeX.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/devPS.c -o devPS.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/devQuartz.c -o devQuartz.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' mkdir -p -- ../../../../library/grDevices/libs make[7]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' making cairoBM.d from ../../../../../.././src/library/grDevices/src/cairo/cairoBM.c make[8]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[9]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' i686-tld-linux-gcc -I. -I../../../../../src/include -I../../../../../.././src/include -I/usr/include/pango-1.0 -I/usr/include/fribidi -I/usr/lib/libffi-3.2.1/include -I/usr/include/cairo -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/harfbuzz -I/usr/include/glib-2.0 -I/usr/lib/glib-2.0/include -I/usr/include/libpng16 -I../../../../../.././src/modules/X11 -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../../.././src/library/grDevices/src/cairo/cairoBM.c -o cairoBM.o i686-tld-linux-gcc -shared -L"../../../../../lib" -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o cairo.so cairoBM.o ../../../../../src/modules/X11/rbitmap.o -ltiff -ljpeg -lpng16 -lz -lpangocairo-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lharfbuzz -lpng16 -lz -lcairo -L"../../../../../lib" -lR -lm make[9]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[8]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[7]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' byte-compiling package 'grDevices' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' building package 'graphics' mkdir -p -- ../../../library/graphics make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' mkdir -p -- ../../../library/graphics/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics/src' making init.d from ../../../../.././src/library/graphics/src/init.c making base.d from ../../../../.././src/library/graphics/src/base.c making graphics.d from ../../../../.././src/library/graphics/src/graphics.c making par.d from ../../../../.././src/library/graphics/src/par.c making plot.d from ../../../../.././src/library/graphics/src/plot.c making plot3d.d from ../../../../.././src/library/graphics/src/plot3d.c making stem.d from ../../../../.././src/library/graphics/src/stem.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/base.c -o base.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/graphics.c -o graphics.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/par.c -o par.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/plot.c -o plot.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/plot3d.c -o plot3d.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I../../../../.././src/main -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/graphics/src/stem.c -o stem.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o graphics.so init.o base.o graphics.o par.o plot.o plot3d.o stem.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics/src' mkdir -p -- ../../../../library/graphics/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' byte-compiling package 'graphics' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' building package 'stats' mkdir -p -- ../../../library/stats make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' mkdir -p -- ../../../library/stats/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' making init.d from ../../../../.././src/library/stats/src/init.c making kmeans.d from ../../../../.././src/library/stats/src/kmeans.c making ansari.d from ../../../../.././src/library/stats/src/ansari.c making bandwidths.d from ../../../../.././src/library/stats/src/bandwidths.c making chisqsim.d from ../../../../.././src/library/stats/src/chisqsim.c making d2x2xk.d from ../../../../.././src/library/stats/src/d2x2xk.c making fexact.d from ../../../../.././src/library/stats/src/fexact.c making kendall.d from ../../../../.././src/library/stats/src/kendall.c making ks.d from ../../../../.././src/library/stats/src/ks.c making line.d from ../../../../.././src/library/stats/src/line.c making smooth.d from ../../../../.././src/library/stats/src/smooth.c making prho.d from ../../../../.././src/library/stats/src/prho.c making swilk.d from ../../../../.././src/library/stats/src/swilk.c making ksmooth.d from ../../../../.././src/library/stats/src/ksmooth.c making loessc.d from ../../../../.././src/library/stats/src/loessc.c making monoSpl.d from ../../../../.././src/library/stats/src/monoSpl.c making isoreg.d from ../../../../.././src/library/stats/src/isoreg.c making Srunmed.d from ../../../../.././src/library/stats/src/Srunmed.c making dblcen.d from ../../../../.././src/library/stats/src/dblcen.c making distance.d from ../../../../.././src/library/stats/src/distance.c making hclust-utils.d from ../../../../.././src/library/stats/src/hclust-utils.c making nls.d from ../../../../.././src/library/stats/src/nls.c making rWishart.d from ../../../../.././src/library/stats/src/rWishart.c making HoltWinters.d from ../../../../.././src/library/stats/src/HoltWinters.c making PPsum.d from ../../../../.././src/library/stats/src/PPsum.c making arima.d from ../../../../.././src/library/stats/src/arima.c making burg.d from ../../../../.././src/library/stats/src/burg.c making filter.d from ../../../../.././src/library/stats/src/filter.c making mAR.d from ../../../../.././src/library/stats/src/mAR.c making pacf.d from ../../../../.././src/library/stats/src/pacf.c making starma.d from ../../../../.././src/library/stats/src/starma.c making port.d from ../../../../.././src/library/stats/src/port.c making family.d from ../../../../.././src/library/stats/src/family.c making sbart.d from ../../../../.././src/library/stats/src/sbart.c making approx.d from ../../../../.././src/library/stats/src/approx.c making loglin.d from ../../../../.././src/library/stats/src/loglin.c making lowess.d from ../../../../.././src/library/stats/src/lowess.c making massdist.d from ../../../../.././src/library/stats/src/massdist.c making splines.d from ../../../../.././src/library/stats/src/splines.c making lm.d from ../../../../.././src/library/stats/src/lm.c making complete_cases.d from ../../../../.././src/library/stats/src/complete_cases.c making cov.d from ../../../../.././src/library/stats/src/cov.c making deriv.d from ../../../../.././src/library/stats/src/deriv.c making fft.d from ../../../../.././src/library/stats/src/fft.c making fourier.d from ../../../../.././src/library/stats/src/fourier.c making model.d from ../../../../.././src/library/stats/src/model.c making optim.d from ../../../../.././src/library/stats/src/optim.c making optimize.d from ../../../../.././src/library/stats/src/optimize.c making integrate.d from ../../../../.././src/library/stats/src/integrate.c making random.d from ../../../../.././src/library/stats/src/random.c making distn.d from ../../../../.././src/library/stats/src/distn.c making zeroin.d from ../../../../.././src/library/stats/src/zeroin.c making rcont.d from ../../../../.././src/library/stats/src/rcont.c making influence.d from ../../../../.././src/library/stats/src/influence.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/kmeans.c -o kmeans.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/ansari.c -o ansari.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/bandwidths.c -o bandwidths.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/chisqsim.c -o chisqsim.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/d2x2xk.c -o d2x2xk.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/fexact.c -o fexact.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/kendall.c -o kendall.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/ks.c -o ks.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/line.c -o line.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/smooth.c -o smooth.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/prho.c -o prho.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/swilk.c -o swilk.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/ksmooth.c -o ksmooth.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/loessc.c -o loessc.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/monoSpl.c -o monoSpl.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/isoreg.c -o isoreg.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/Srunmed.c -o Srunmed.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/dblcen.c -o dblcen.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/distance.c -o distance.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/hclust-utils.c -o hclust-utils.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/nls.c -o nls.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/rWishart.c -o rWishart.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/HoltWinters.c -o HoltWinters.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/PPsum.c -o PPsum.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/arima.c -o arima.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/burg.c -o burg.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/filter.c -o filter.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/mAR.c -o mAR.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/pacf.c -o pacf.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/starma.c -o starma.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/port.c -o port.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/family.c -o family.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/sbart.c -o sbart.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/approx.c -o approx.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/loglin.c -o loglin.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/lowess.c -o lowess.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/massdist.c -o massdist.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/splines.c -o splines.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/lm.c -o lm.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/complete_cases.c -o complete_cases.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/cov.c -o cov.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/deriv.c -o deriv.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/fft.c -o fft.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/fourier.c -o fourier.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/model.c -o model.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/optim.c -o optim.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/optimize.c -o optimize.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/integrate.c -o integrate.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/random.c -o random.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/distn.c -o distn.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/zeroin.c -o zeroin.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/rcont.c -o rcont.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fopenmp -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/influence.c -o influence.o gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/bsplvd.f -o bsplvd.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/bvalue.f -o bvalue.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/bvalus.f -o bvalus.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/loessf.f -o loessf.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/ppr.f -o ppr.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/qsbart.f -o qsbart.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/sgram.f -o sgram.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/sinerp.f -o sinerp.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/sslvrg.f -o sslvrg.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/stxwx.f -o stxwx.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/hclust.f -o hclust.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/kmns.f -o kmns.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/eureka.f -o eureka.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/stl.f -o stl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -msse2 -mfpmath=sse -c ../../../../.././src/library/stats/src/portsrc.f -o portsrc.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/stats/src/lminfl.f -o lminfl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o dblcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fourier.o model.o optim.o optimize.o integrate.o random.o distn.o zeroin.o rcont.o influence.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o eureka.o stl.o portsrc.o lminfl.o -fopenmp -llapack -lblas -lgfortran -lm -lquadmath -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' mkdir -p -- ../../../../library/stats/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' byte-compiling package 'stats' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/datasets' building package 'datasets' mkdir -p -- ../../../library/datasets make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/datasets' Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/datasets' mkdir -p -- ../../../library/datasets/data make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/datasets' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' building package 'methods' mkdir -p -- ../../../library/methods make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' mkdir -p -- ../../../library/methods/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' making do_substitute_direct.d from ../../../../.././src/library/methods/src/do_substitute_direct.c making init.d from ../../../../.././src/library/methods/src/init.c making methods_list_dispatch.d from ../../../../.././src/library/methods/src/methods_list_dispatch.c making slot.d from ../../../../.././src/library/methods/src/slot.c making class_support.d from ../../../../.././src/library/methods/src/class_support.c making tests.d from ../../../../.././src/library/methods/src/tests.c making utils.d from ../../../../.././src/library/methods/src/utils.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/do_substitute_direct.c -o do_substitute_direct.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/methods_list_dispatch.c -o methods_list_dispatch.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/slot.c -o slot.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/class_support.c -o class_support.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/tests.c -o tests.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/methods/src/utils.c -o utils.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o methods.so do_substitute_direct.o init.o methods_list_dispatch.o slot.o class_support.o tests.o utils.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' mkdir -p -- ../../../../library/methods/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' byte-compiling 'methods' initializing class and method definitions ... done make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' building package 'grid' mkdir -p -- ../../../library/grid mkdir -p -- ../../../library/grid/doc make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' mkdir -p -- ../../../library/grid/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid/src' making gpar.d from ../../../../.././src/library/grid/src/gpar.c making grid.d from ../../../../.././src/library/grid/src/grid.c making just.d from ../../../../.././src/library/grid/src/just.c making layout.d from ../../../../.././src/library/grid/src/layout.c making matrix.d from ../../../../.././src/library/grid/src/matrix.c making register.d from ../../../../.././src/library/grid/src/register.c making state.d from ../../../../.././src/library/grid/src/state.c making unit.d from ../../../../.././src/library/grid/src/unit.c making util.d from ../../../../.././src/library/grid/src/util.c making viewport.d from ../../../../.././src/library/grid/src/viewport.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/gpar.c -o gpar.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/grid.c -o grid.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/just.c -o just.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/layout.c -o layout.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/matrix.c -o matrix.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/register.c -o register.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/state.c -o state.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/unit.c -o unit.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/util.c -o util.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grid/src/viewport.c -o viewport.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o grid.so gpar.o grid.o just.o layout.o matrix.o register.o state.o unit.o util.o viewport.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid/src' mkdir -p -- ../../../../library/grid/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' byte-compiling package 'grid' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' building package 'splines' mkdir -p -- ../../../library/splines make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' mkdir -p -- ../../../library/splines/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' making splines.d from ../../../../.././src/library/splines/src/splines.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/splines/src/splines.c -o splines.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o splines.so splines.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' mkdir -p -- ../../../../library/splines/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' byte-compiling package 'splines' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' building package 'stats4' mkdir -p -- ../../../library/stats4 make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' mkdir -p -- ../../../library/stats4/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' byte-compiling package 'stats4' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' building package 'tcltk' mkdir -p -- ../../../library/tcltk/R make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' mkdir -p -- ../../../library/tcltk/exec make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' making init.d from ../../../../.././src/library/tcltk/src/init.c making tcltk.d from ../../../../.././src/library/tcltk/src/tcltk.c making tcltk_unix.d from ../../../../.././src/library/tcltk/src/tcltk_unix.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tcltk/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tcltk/src/tcltk.c -o tcltk.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -I/usr/include -I/usr/include -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/tcltk/src/tcltk_unix.c -o tcltk_unix.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o tcltk.so init.o tcltk.o tcltk_unix.o -L/usr/lib -ltcl8.6 -L/usr/lib -ltk8.6 -L/usr/lib -lX11 -lXss -lXext -lm -L../../../../lib -lR make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' mkdir -p -- ../../../../library/tcltk/libs make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' byte-compiling package 'tcltk' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' building package 'parallel' mkdir -p -- ../../../library/parallel mkdir -p -- ../../../library/parallel/doc make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' mkdir -p -- ../../../library/parallel/R Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' making init.d from ../../../../.././src/library/parallel/src/init.c making rngstream.d from ../../../../.././src/library/parallel/src/rngstream.c making fork.d from ../../../../.././src/library/parallel/src/fork.c i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/parallel/src/init.c -o init.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/parallel/src/rngstream.c -o rngstream.o i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/parallel/src/fork.c -o fork.o i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o parallel.so init.o rngstream.o fork.o -L../../../../lib -lR make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' mkdir -p -- ../../../../library/parallel/libs make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' byte-compiling package 'parallel' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tests' you should 'make docs' now ... make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' creating doc/NEWS 'pdflatex' is needed to make NEWS.pdf but is missing on your system. make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' creating doc/manual/R-FAQ.html creating doc/manual/version.texi creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' mkdir -p -- ../../doc/manual/images make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' installing parsed Rd make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in format.POSIXlt(as.POSIXlt(x), ...) : unknown timezone 'localtime' base stats utils methods graphics grDevices datasets grid Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' building/updating package metadata ... make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' writing package indices make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/Recommended' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/Recommended' begin installing recommended package MASS Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'MASS' ... ** package 'MASS' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpZujqqD/R.INSTALL4233743d4754/MASS/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c MASS.c -o MASS.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c lqs.c -o lqs.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o MASS.so MASS.o lqs.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpZujqqD/R.INSTALL4233743d4754/MASS/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/MASS/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (MASS) begin installing recommended package lattice Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'lattice' ... ** package 'lattice' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpWUJ4R3/R.INSTALL471468ce14e8/lattice/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c threeDplot.c -o threeDplot.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o lattice.so init.o threeDplot.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpWUJ4R3/R.INSTALL471468ce14e8/lattice/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/lattice/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (lattice) begin installing recommended package Matrix Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'Matrix' ... ** package 'Matrix' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c CHMfactor.c -o CHMfactor.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c Csparse.c -o Csparse.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c TMatrix_as.c -o TMatrix_as.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c Tsparse.c -o Tsparse.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c Mutils.c -o Mutils.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chm_common.c -o chm_common.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cs.c -o cs.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cs_utils.c -o cs_utils.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dense.c -o dense.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dgCMatrix.c -o dgCMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dgTMatrix.c -o dgTMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dgeMatrix.c -o dgeMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dpoMatrix.c -o dpoMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dppMatrix.c -o dppMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dsCMatrix.c -o dsCMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dsyMatrix.c -o dsyMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dspMatrix.c -o dspMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dtCMatrix.c -o dtCMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dtTMatrix.c -o dtTMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dtrMatrix.c -o dtrMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dtpMatrix.c -o dtpMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c factorizations.c -o factorizations.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ldense.c -o ldense.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c lgCMatrix.c -o lgCMatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c sparseQR.c -o sparseQR.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c abIndex.c -o abIndex.o make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD' ( cd Lib ; /usr/bin/make clean ) make[5]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD/Lib' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD' ( cd Source ; /usr/bin/make clean ) make[5]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD/Source' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD' ( cd Source ; /usr/bin/make clean ) make[5]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD/Source' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/SuiteSparse_config' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/SuiteSparse_config' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD' ( cd Lib ; /usr/bin/make -f "/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc/Makeconf" -f Makefile ) make[5]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD/Lib' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_aat.c -o cholmod_aat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_add.c -o cholmod_add.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_band.c -o cholmod_band.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_change_factor.c -o cholmod_change_factor.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_common.c -o cholmod_common.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_complex.c -o cholmod_complex.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_copy.c -o cholmod_copy.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_dense.c -o cholmod_dense.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_error.c -o cholmod_error.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_factor.c -o cholmod_factor.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_memory.c -o cholmod_memory.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_sparse.c -o cholmod_sparse.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_transpose.c -o cholmod_transpose.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_triplet.c -o cholmod_triplet.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Core/cholmod_version.c -o cholmod_version.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Check/cholmod_check.c -o cholmod_check.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Check/cholmod_read.c -o cholmod_read.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Check/cholmod_write.c -o cholmod_write.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_amd.c -o cholmod_amd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_analyze.c -o cholmod_analyze.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_colamd.c -o cholmod_colamd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_etree.c -o cholmod_etree.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_factorize.c -o cholmod_factorize.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_postorder.c -o cholmod_postorder.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_rcond.c -o cholmod_rcond.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_resymbol.c -o cholmod_resymbol.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_rowcolcounts.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_rowfac.c -o cholmod_rowfac.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_solve.c -o cholmod_solve.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Cholesky/cholmod_spsolve.c -o cholmod_spsolve.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_drop.c -o cholmod_drop.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_horzcat.c -o cholmod_horzcat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_norm.c -o cholmod_norm.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_scale.c -o cholmod_scale.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_sdmult.c -o cholmod_sdmult.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_ssmult.c -o cholmod_ssmult.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_submatrix.c -o cholmod_submatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_vertcat.c -o cholmod_vertcat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../MatrixOps/cholmod_symmetry.c -o cholmod_symmetry.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Modify/cholmod_rowadd.c -o cholmod_rowadd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Modify/cholmod_rowdel.c -o cholmod_rowdel.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Modify/cholmod_updown.c -o cholmod_updown.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Supernodal/cholmod_super_numeric.c -o cholmod_super_numeric.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Supernodal/cholmod_super_solve.c -o cholmod_super_solve.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_super_symbolic.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_aat.c -o cholmod_l_aat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_add.c -o cholmod_l_add.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_band.c -o cholmod_l_band.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_change_factor.c -o cholmod_l_change_factor.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_common.c -o cholmod_l_common.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_complex.c -o cholmod_l_complex.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_copy.c -o cholmod_l_copy.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_dense.c -o cholmod_l_dense.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_error.c -o cholmod_l_error.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_factor.c -o cholmod_l_factor.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_memory.c -o cholmod_l_memory.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_sparse.c -o cholmod_l_sparse.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_transpose.c -o cholmod_l_transpose.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_triplet.c -o cholmod_l_triplet.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Core/cholmod_version.c -o cholmod_l_version.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Check/cholmod_check.c -o cholmod_l_check.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Check/cholmod_read.c -o cholmod_l_read.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Check/cholmod_write.c -o cholmod_l_write.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_amd.c -o cholmod_l_amd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_analyze.c -o cholmod_l_analyze.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_colamd.c -o cholmod_l_colamd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_etree.c -o cholmod_l_etree.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_factorize.c -o cholmod_l_factorize.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_postorder.c -o cholmod_l_postorder.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_rcond.c -o cholmod_l_rcond.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_resymbol.c -o cholmod_l_resymbol.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_rowcolcounts.c -o cholmod_l_rowcolcounts.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_rowfac.c -o cholmod_l_rowfac.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_solve.c -o cholmod_l_solve.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Cholesky/cholmod_spsolve.c -o cholmod_l_spsolve.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_drop.c -o cholmod_l_drop.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_horzcat.c -o cholmod_l_horzcat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_norm.c -o cholmod_l_norm.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_scale.c -o cholmod_l_scale.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_sdmult.c -o cholmod_l_sdmult.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_ssmult.c -o cholmod_l_ssmult.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_submatrix.c -o cholmod_l_submatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_vertcat.c -o cholmod_l_vertcat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../MatrixOps/cholmod_symmetry.c -o cholmod_l_symmetry.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Modify/cholmod_rowadd.c -o cholmod_l_rowadd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Modify/cholmod_rowdel.c -o cholmod_l_rowdel.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Modify/cholmod_updown.c -o cholmod_l_updown.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Supernodal/cholmod_super_numeric.c -o cholmod_l_super_numeric.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Supernodal/cholmod_super_solve.c -o cholmod_l_super_solve.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../../AMD/Include -I../../AMD/Source -I../../COLAMD/Include -I../Include -I../../SuiteSparse_config -DNPARTITION -DNPRINT -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -DDLONG -c ../Supernodal/cholmod_super_symbolic.c -o cholmod_l_super_symbolic.o ar -rucs ../../CHOLMOD.a cholmod_aat.o cholmod_add.o cholmod_band.o cholmod_change_factor.o cholmod_common.o cholmod_complex.o cholmod_copy.o cholmod_dense.o cholmod_error.o cholmod_factor.o cholmod_memory.o cholmod_sparse.o cholmod_transpose.o cholmod_triplet.o cholmod_version.o cholmod_check.o cholmod_read.o cholmod_write.o cholmod_amd.o cholmod_analyze.o cholmod_colamd.o cholmod_etree.o cholmod_factorize.o cholmod_postorder.o cholmod_rcond.o cholmod_resymbol.o cholmod_rowcolcounts.o cholmod_rowfac.o cholmod_solve.o cholmod_spsolve.o cholmod_drop.o cholmod_horzcat.o cholmod_norm.o cholmod_scale.o cholmod_sdmult.o cholmod_ssmult.o cholmod_submatrix.o cholmod_vertcat.o cholmod_symmetry.o cholmod_rowadd.o cholmod_rowdel.o cholmod_updown.o cholmod_super_numeric.o cholmod_super_solve.o cholmod_super_symbolic.o cholmod_l_aat.o cholmod_l_add.o cholmod_l_band.o cholmod_l_change_factor.o cholmod_l_common.o cholmod_l_complex.o cholmod_l_copy.o cholmod_l_dense.o cholmod_l_error.o cholmod_l_factor.o cholmod_l_memory.o cholmod_l_sparse.o cholmod_l_transpose.o cholmod_l_triplet.o cholmod_l_version.o cholmod_l_check.o cholmod_l_read.o cholmod_l_write.o cholmod_l_amd.o cholmod_l_analyze.o cholmod_l_colamd.o cholmod_l_etree.o cholmod_l_factorize.o cholmod_l_postorder.o cholmod_l_rcond.o cholmod_l_resymbol.o cholmod_l_rowcolcounts.o cholmod_l_rowfac.o cholmod_l_solve.o cholmod_l_spsolve.o cholmod_l_drop.o cholmod_l_horzcat.o cholmod_l_norm.o cholmod_l_scale.o cholmod_l_sdmult.o cholmod_l_ssmult.o cholmod_l_submatrix.o cholmod_l_vertcat.o cholmod_l_symmetry.o cholmod_l_rowadd.o cholmod_l_rowdel.o cholmod_l_updown.o cholmod_l_super_numeric.o cholmod_l_super_solve.o cholmod_l_super_symbolic.o make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD/Lib' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/CHOLMOD' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD' ( cd Source ; /usr/bin/make -f "/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD/Source' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c colamd_global.c -o colamd_global.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c colamd.c -o colamd.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c colamd.c -o colamd_l.o ar -rucs ../../COLAMD.a colamd_global.o colamd.o colamd_l.o make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD/Source' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/COLAMD' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD' ( cd Source ; /usr/bin/make -f "/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc/Makeconf" -f Makefile lib ) make[5]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD/Source' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_aat.c -o amd_i_aat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_aat.c -o amd_l_aat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_1.c -o amd_i_1.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_1.c -o amd_l_1.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_2.c -o amd_i_2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_2.c -o amd_l_2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_postorder.c -o amd_i_postorder.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_postorder.c -o amd_l_postorder.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_post_tree.c -o amd_i_post_tree.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_post_tree.c -o amd_l_post_tree.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_defaults.c -o amd_i_defaults.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_defaults.c -o amd_l_defaults.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_order.c -o amd_i_order.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_order.c -o amd_l_order.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_control.c -o amd_i_control.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_control.c -o amd_l_control.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_info.c -o amd_i_info.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_info.c -o amd_l_info.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_valid.c -o amd_i_valid.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_valid.c -o amd_l_valid.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_preprocess.c -o amd_i_preprocess.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_preprocess.c -o amd_l_preprocess.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_dump.c -o amd_i_dump.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_dump.c -o amd_l_dump.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDINT -c amd_global.c -o amd_i_global.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I../Include -I../../SuiteSparse_config -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -I../Include -DDLONG -c amd_global.c -o amd_l_global.o ar -rucs ../../AMD.a amd_i_aat.o amd_l_aat.o amd_i_1.o amd_l_1.o amd_i_2.o amd_l_2.o amd_i_postorder.o amd_l_postorder.o amd_i_post_tree.o amd_l_post_tree.o amd_i_defaults.o amd_l_defaults.o amd_i_order.o amd_l_order.o amd_i_control.o amd_l_control.o amd_i_info.o amd_l_info.o amd_i_valid.o amd_l_valid.o amd_i_preprocess.o amd_l_preprocess.o amd_i_dump.o amd_l_dump.o amd_i_global.o amd_l_global.o make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD/Source' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/AMD' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/SuiteSparse_config' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -DNTIMER -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c SuiteSparse_config.c -o SuiteSparse_config.o ar -rucs ../SuiteSparse_config.a SuiteSparse_config.o make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src/SuiteSparse_config' i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD.a COLAMD.a AMD.a SuiteSparse_config.a -llapack -lblas -lgfortran -lm -lquadmath -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQYYfVq/R.INSTALL4c0154ccbd21/Matrix/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/Matrix/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function for 'chol2inv' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'chol2inv' from package 'base' in package 'Matrix' Creating a generic function for 'diag' from package 'base' in package 'Matrix' Creating a generic function for 'drop' from package 'base' in package 'Matrix' Creating a generic function for 'cov2cor' from package 'stats' in package 'Matrix' Creating a generic function for 'unname' from package 'base' in package 'Matrix' Creating a generic function for 'norm' from package 'base' in package 'Matrix' Creating a generic function for 'rcond' from 'base' in package 'Matrix' (from the saved implicit definition) Creating a generic function for 'rcond' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"matrix.csr","dgRMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"dgRMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","dgCMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"dgCMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","dgTMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dgTMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"dsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csr","dgCMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","dgCMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","RsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.csc","CsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.coo","TsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csr","CsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","CsparseMatrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","TsparseMatrix"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","TsparseMatrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.csr"': no definition for class "matrix.csr" in method for 'coerce' with signature '"CsparseMatrix","matrix.coo"': no definition for class "matrix.coo" in method for 'coerce' with signature '"CsparseMatrix","matrix.csc"': no definition for class "matrix.csc" in method for 'coerce' with signature '"matrix.csr","Matrix"': no definition for class "matrix.csr" in method for 'coerce' with signature '"matrix.coo","Matrix"': no definition for class "matrix.coo" in method for 'coerce' with signature '"matrix.csc","Matrix"': no definition for class "matrix.csc" Creating a generic function for 'colSums' from package 'base' in package 'Matrix' Creating a generic function for 'colMeans' from package 'base' in package 'Matrix' Creating a generic function for 'rowSums' from package 'base' in package 'Matrix' Creating a generic function for 'rowMeans' from package 'base' in package 'Matrix' in method for 'colSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowSums' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'colMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" in method for 'rowMeans' with signature 'x="igCMatrix"': no definition for class "igCMatrix" Creating a generic function for 'zapsmall' from package 'base' in package 'Matrix' Creating a generic function for 'diag<-' from package 'base' in package 'Matrix' Creating a generic function for 'crossprod' from package 'base' in package 'Matrix' Creating a generic function for 'tcrossprod' from package 'base' in package 'Matrix' Creating a generic function for 'which' from package 'base' in package 'Matrix' in method for 'coerce' with signature '"graphAM","sparseMatrix"': no definition for class "graphAM" in method for 'coerce' with signature '"graph","CsparseMatrix"': no definition for class "graph" in method for 'coerce' with signature '"graph","Matrix"': no definition for class "graph" in method for 'coerce' with signature '"graphNEL","CsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"graphNEL","TsparseMatrix"': no definition for class "graphNEL" in method for 'coerce' with signature '"sparseMatrix","graph"': no definition for class "graph" in method for 'coerce' with signature '"sparseMatrix","graphNEL"': no definition for class "graphNEL" in method for 'coerce' with signature '"TsparseMatrix","graphNEL"': no definition for class "graphNEL" Creating a generic function for 'qr.R' from package 'base' in package 'Matrix' Creating a generic function for 'qr.Q' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qy' from package 'base' in package 'Matrix' Creating a generic function for 'qr.qty' from package 'base' in package 'Matrix' Creating a generic function for 'qr.coef' from package 'base' in package 'Matrix' Creating a generic function for 'qr.resid' from package 'base' in package 'Matrix' Creating a generic function for 'qr.fitted' from package 'base' in package 'Matrix' Creating a generic function for 'toeplitz' from package 'stats' in package 'Matrix' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Matrix) begin installing recommended package nlme Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'nlme' ... ** package 'nlme' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/Rtmpq5PM5u/R.INSTALL54466dc76444/nlme/src' gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chol.f -o chol.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c corStruct.c -o corStruct.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c gnls.c -o gnls.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c matrix.c -o matrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c nlOptimizer.c -o nlOptimizer.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c nlme.c -o nlme.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c nlmefit.c -o nlmefit.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pdMat.c -o pdMat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fvisibility=hidden -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pythag.c -o pythag.o gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rs.f -o rs.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o nlme.so chol.o corStruct.o gnls.o init.o matrix.o nlOptimizer.o nlme.o nlmefit.o pdMat.o pythag.o rs.o -lgfortran -lm -lquadmath -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/Rtmpq5PM5u/R.INSTALL54466dc76444/nlme/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/nlme/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nlme) begin installing recommended package survival Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'survival' ... ** package 'survival' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpAwUwkx/R.INSTALL597e44dd90b4/survival/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agexact.c -o agexact.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agfit4.c -o agfit4.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agfit5.c -o agfit5.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agmart.c -o agmart.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agmart2.c -o agmart2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agmart3.c -o agmart3.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agscore.c -o agscore.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agsurv3.c -o agsurv3.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agsurv4.c -o agsurv4.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c agsurv5.c -o agsurv5.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chinv2.c -o chinv2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chinv3.c -o chinv3.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cholesky2.c -o cholesky2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cholesky3.c -o cholesky3.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cholesky5.c -o cholesky5.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chsolve2.c -o chsolve2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chsolve3.c -o chsolve3.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c chsolve5.c -o chsolve5.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c concordance1.c -o concordance1.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c concordance3.c -o concordance3.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cox_Rcallback.c -o cox_Rcallback.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxcount1.c -o coxcount1.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxdetail.c -o coxdetail.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxexact.c -o coxexact.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxfit5.c -o coxfit5.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxfit6.c -o coxfit6.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxmart.c -o coxmart.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxmart2.c -o coxmart2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxph_wtest.c -o coxph_wtest.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxsafe.c -o coxsafe.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxscho.c -o coxscho.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxscore.c -o coxscore.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dmatrix.c -o dmatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c doloop.c -o doloop.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c finegray.c -o finegray.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c gchol.c -o gchol.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c norisk.c -o norisk.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pyears1.c -o pyears1.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pyears2.c -o pyears2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pyears3b.c -o pyears3b.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pystep.c -o pystep.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survConcordance.c -o survConcordance.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survdiff2.c -o survdiff2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survfit4.c -o survfit4.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survfitci.c -o survfitci.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survfitkm.c -o survfitkm.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survpenal.c -o survpenal.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survreg6.c -o survreg6.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survreg7.c -o survreg7.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survregc1.c -o survregc1.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survregc2.c -o survregc2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c survsplit.c -o survsplit.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c tmerge.c -o tmerge.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o survival.so agexact.o agfit4.o agfit5.o agmart.o agmart2.o agmart3.o agscore.o agsurv3.o agsurv4.o agsurv5.o chinv2.o chinv3.o cholesky2.o cholesky3.o cholesky5.o chsolve2.o chsolve3.o chsolve5.o concordance1.o concordance3.o cox_Rcallback.o coxcount1.o coxdetail.o coxexact.o coxfit5.o coxfit6.o coxmart.o coxmart2.o coxph_wtest.o coxsafe.o coxscho.o coxscore.o dmatrix.o doloop.o finegray.o gchol.o init.o norisk.o pyears1.o pyears2.o pyears3b.o pystep.o survConcordance.o survdiff2.o survfit4.o survfitci.o survfitkm.o survpenal.o survreg6.o survreg7.o survregc1.o survregc2.o survsplit.o tmerge.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpAwUwkx/R.INSTALL597e44dd90b4/survival/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/survival/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (survival) begin installing recommended package boot Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'boot' ... ** package 'boot' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (boot) begin installing recommended package cluster Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'cluster' ... ** package 'cluster' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/Rtmpd8nYI7/R.INSTALL641d22478b4a/cluster/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c clara.c -o clara.o gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c daisy.f -o daisy.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dysta.f -o dysta.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c fanny.c -o fanny.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c mona.c -o mona.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pam.c -o pam.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c sildist.c -o sildist.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c spannel.c -o spannel.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c twins.c -o twins.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o cluster.so clara.o daisy.o dysta.o fanny.o init.o mona.o pam.o sildist.o spannel.o twins.o -lgfortran -lm -lquadmath -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/Rtmpd8nYI7/R.INSTALL641d22478b4a/cluster/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/cluster/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (cluster) begin installing recommended package codetools Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'codetools' ... ** package 'codetools' successfully unpacked and MD5 sums checked ** using non-staged installation ** R ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (codetools) begin installing recommended package foreign Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'foreign' ... ** package 'foreign' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQ4bj1k/R.INSTALL6de36c64a87a/foreign/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c R_systat.c -o R_systat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c Rdbfread.c -o Rdbfread.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c Rdbfwrite.c -o Rdbfwrite.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c SASxport.c -o SASxport.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c avl.c -o avl.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dbfopen.c -o dbfopen.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c file-handle.c -o file-handle.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c format.c -o format.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c minitab.c -o minitab.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pfm-read.c -o pfm-read.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c sfm-read.c -o sfm-read.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c spss.c -o spss.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c stataread.c -o stataread.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o foreign.so R_systat.o Rdbfread.o Rdbfwrite.o SASxport.o avl.o dbfopen.o file-handle.o format.o init.o minitab.o pfm-read.o sfm-read.o spss.o stataread.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpQ4bj1k/R.INSTALL6de36c64a87a/foreign/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/foreign/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (foreign) begin installing recommended package KernSmooth Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'KernSmooth' ... ** package 'KernSmooth' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpMtp7aQ/R.INSTALL72ec4047e7f7/KernSmooth/src' gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c blkest.f -o blkest.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c cp.f -o cp.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dgedi.f -o dgedi.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dgefa.f -o dgefa.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c dgesl.f -o dgesl.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c linbin.f -o linbin.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c linbin2D.f -o linbin2D.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c locpoly.f -o locpoly.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rlbin.f -o rlbin.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c sdiag.f -o sdiag.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran gfortran -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c sstdiag.f -o sstdiag.o f951: Warning: command line option '-Wformat=1' is valid for C/C++/ObjC/ObjC++ but not for Fortran f951: Warning: '-Werror=' argument '-Werror=format-security' is not valid for Fortran i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o KernSmooth.so blkest.o cp.o dgedi.o dgefa.o dgesl.o init.o linbin.o linbin2D.o locpoly.o rlbin.o sdiag.o sstdiag.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpMtp7aQ/R.INSTALL72ec4047e7f7/KernSmooth/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/KernSmooth/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (KernSmooth) begin installing recommended package rpart Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'rpart' ... ** package 'rpart' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpOaioLu/R.INSTALL77de1d1058da/rpart/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c anova.c -o anova.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c anovapred.c -o anovapred.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c branch.c -o branch.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c bsplit.c -o bsplit.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c choose_surg.c -o choose_surg.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c fix_cp.c -o fix_cp.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c free_tree.c -o free_tree.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c gini.c -o gini.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c graycode.c -o graycode.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c insert_split.c -o insert_split.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c make_cp_list.c -o make_cp_list.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c make_cp_table.c -o make_cp_table.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c mysort.c -o mysort.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c nodesplit.c -o nodesplit.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c partition.c -o partition.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c poisson.c -o poisson.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pred_rpart.c -o pred_rpart.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c print_tree.c -o print_tree.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rpart.c -o rpart.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rpart_callback.c -o rpart_callback.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rpartexp.c -o rpartexp.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rpartexp2.c -o rpartexp2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rpcountup.c -o rpcountup.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rpmatrix.c -o rpmatrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rundown.c -o rundown.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c rundown2.c -o rundown2.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c surrogate.c -o surrogate.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c usersplit.c -o usersplit.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c xpred.c -o xpred.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c xval.c -o xval.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o rpart.so anova.o anovapred.o branch.o bsplit.o choose_surg.o fix_cp.o free_tree.o gini.o graycode.o init.o insert_split.o make_cp_list.o make_cp_table.o mysort.o nodesplit.o partition.o poisson.o pred_rpart.o print_tree.o rpart.o rpart_callback.o rpartexp.o rpartexp2.o rpcountup.o rpmatrix.o rundown.o rundown2.o surrogate.o usersplit.o xpred.o xval.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpOaioLu/R.INSTALL77de1d1058da/rpart/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/rpart/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rpart) begin installing recommended package class Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'class' ... ** package 'class' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpNTZlHk/R.INSTALL7d5515129e8b/class/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c class.c -o class.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o class.so class.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpNTZlHk/R.INSTALL7d5515129e8b/class/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/class/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (class) begin installing recommended package nnet Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'nnet' ... ** package 'nnet' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpYJdHBg/R.INSTALL35c2c003145/nnet/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c nnet.c -o nnet.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o nnet.so nnet.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpYJdHBg/R.INSTALL35c2c003145/nnet/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/nnet/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (nnet) begin installing recommended package spatial Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'spatial' ... ** package 'spatial' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpqKOQaC/R.INSTALL82fe403843/spatial/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c krc.c -o krc.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c pps.c -o pps.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o spatial.so init.o krc.o pps.o -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpqKOQaC/R.INSTALL82fe403843/spatial/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/spatial/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (spatial) begin installing recommended package mgcv Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in strptime(xx, f, tz = tz) : unknown timezone 'localtime' * installing *source* package 'mgcv' ... ** package 'mgcv' successfully unpacked and MD5 sums checked ** using non-staged installation ** libs make[3]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/RtmpHvRrKW/R.INSTALLd1c4b2714fa/mgcv/src' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c coxph.c -o coxph.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c discrete.c -o discrete.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c gdi.c -o gdi.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c init.c -o init.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c magic.c -o magic.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c mat.c -o mat.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c matrix.c -o matrix.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c mgcv.c -o mgcv.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c misc.c -o misc.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c mvn.c -o mvn.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c qp.c -o qp.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c soap.c -o soap.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c sparse-smooth.c -o sparse-smooth.o i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c tprs.c -o tprs.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o mgcv.so coxph.o discrete.o gdi.o init.o magic.o mat.o matrix.o mgcv.o misc.o mvn.o qp.o soap.o sparse-smooth.o tprs.o -llapack -lblas -lgfortran -lm -lquadmath -fopenmp -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/RtmpHvRrKW/R.INSTALLd1c4b2714fa/mgcv/src' installing to /tmp/B.i0gomc/BUILD/R-3.6.0/build/library/mgcv/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (mgcv) make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/Recommended' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/Recommended' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' 'pdflatex' is needed to make vignettes but is missing on your system. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build' configuring Java ... Java interpreter : /usr/bin/java Java version : 1.8.0_222 Java home path : /usr/lib/jvm/icedtea8-3.13.0/jre Java compiler : /usr/bin/javac Java headers gen.: /usr/bin/javah Java archive tool: /usr/bin/jar trying to compile and link a JNI program detected JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux detected JNI linker flags : -L$(JAVA_HOME)/lib/i386 -ljvm make[2]: Entering directory '/tmp/B.i0gomc/BUILD/tmp/Rjavareconf.gZM0fi' i686-tld-linux-gcc -I"/tmp/B.i0gomc/BUILD/R-3.6.0/build/include" -DNDEBUG -I/usr/lib/jvm/icedtea8-3.13.0/jre/../include -I/usr/lib/jvm/icedtea8-3.13.0/jre/../include/linux -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c conftest.c -o conftest.o i686-tld-linux-gcc -shared -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o conftest.so conftest.o -L/usr/lib/jvm/icedtea8-3.13.0/jre/lib/i386 -ljvm -L/tmp/B.i0gomc/BUILD/R-3.6.0/build/lib -lR make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/tmp/Rjavareconf.gZM0fi' JAVA_HOME : /usr/lib/jvm/icedtea8-3.13.0/jre Java library path: $(JAVA_HOME)/lib/i386 JNI cpp flags : -I$(JAVA_HOME)/../include -I$(JAVA_HOME)/../include/linux JNI linker flags : -L$(JAVA_HOME)/lib/i386 -ljvm Updating Java configuration in /tmp/B.i0gomc/BUILD/R-3.6.0/build Done. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build' + /usr/bin/make -j4 docs pdf info make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I../../.././doc/manual ../../.././doc/manual/R-FAQ.texi creating doc/manual/version.tex make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/m4' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/m4' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tools' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tools' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[2]: Nothing to be done for 'R'. make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' collecting LaTeX docs for package 'tools' ... collecting LaTeX docs for package 'base' ... make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' creating src/scripts/R.fe make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include/R_ext' make[3]: Nothing to be done for 'R'. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include/R_ext' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[4]: 'Makedeps' is up to date. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[4]: 'libtre.a' is up to date. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[4]: 'Makedeps' is up to date. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[4]: 'libtz.a' is up to date. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[3]: 'libappl.a' is up to date. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[3]: 'libnmath.a' is up to date. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' Converting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX config.status: creating src/unix/Makefile make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[3]: 'libunix.a' is up to date. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -DR_HOME='"/tmp/B.i0gomc/BUILD/R-3.6.0/build"' \ -o Rscript ../../.././src/unix/Rscript.c Warning: Your system is mis-configured: '/etc/localtime' is not a symlink make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' creating doc/manual/version.texi config.status: creating src/main/Makefile make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/serialize.c -o serialize.o /usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I../../.././doc/manual ../../.././doc/manual/R-admin.texi Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' ..i686-tld-linux-gcc -I../../.././src/extra -I. -I../../src/include -I../../.././src/include -I../../.././src/nmath -DHAVE_CONFIG_H -fopenmp -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../.././src/main/version.c -o version.o .i686-tld-linux-gcc -shared -fopenmp -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o libR.so CommandLineArgs.o Rdynload.o Renviron.o RNG.o agrep.o altclasses.o altrep.o apply.o arithmetic.o array.o attrib.o bind.o builtin.o character.o coerce.o colors.o complex.o connections.o context.o cum.o dcf.o datetime.o debug.o deparse.o devices.o dotcode.o dounzip.o dstruct.o duplicate.o edit.o engine.o envir.o errors.o eval.o format.o gevents.o gram.o gram-ex.o graphics.o grep.o identical.o inlined.o inspect.o internet.o iosupport.o lapack.o list.o localecharset.o logic.o main.o mapply.o match.o memory.o names.o objects.o options.o paste.o platform.o plot.o plot3d.o plotmath.o print.o printarray.o printvector.o printutils.o qsort.o radixsort.o random.o raw.o registration.o relop.o rlocale.o saveload.o scan.o seq.o serialize.o sort.o source.o split.o sprintf.o startup.o subassign.o subscript.o subset.o summary.o sysutils.o times.o unique.o util.o version.o g_alab_her.o g_cntrlify.o g_fontdb.o g_her_glyph.o xxxpr.o `ls ../unix/*.o ../appl/*.o ../nmath/*.o` ../extra/tre/libtre.a ../extra/tzone/libtz.a -lblas -lgfortran -lm -lquadmath -lreadline -lpcre2-8 -lpcre -llzma -lbz2 -lz -lrt -ldl -lm -licuuc -licui18n make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' /tmp/B.i0gomc/BUILD/R-3.6.0/build/lib/libR.so is unchanged make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' /tmp/B.i0gomc/BUILD/R-3.6.0/build/bin/exec/R is unchanged make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' make[4]: 'internet.so' is up to date. make[4]: Leaving directory 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/tmp/B.i0gomc/BUILD/R-3.6.0/build/modules/R_de.so is unchanged make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/profile' building system startup profile make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/profile' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' building package 'translations' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' ./usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I../../.././doc/manual ../../.././doc/manual/R-data.texi make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/translations' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' building package 'base' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' .all.R is unchanged make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' building package 'tools' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' .all.R is unchanged make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools/src' make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tools/src' 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.collecting LaTeX docs for package 'utils' ... .Converting parsed Rd's to LaTeX .Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Nothing to be done for 'iconvlist'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' ../../../../library/utils/libs/utils.so is unchanged make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/utils' make[4]: Entering directory 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'/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' i686-tld-linux-gcc -I"../../../../include" -DNDEBUG -I../../../include -I../../../../.././src/include -DHAVE_CONFIG_H -fpic -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -c ../../../../.././src/library/grDevices/src/devPS.c -o devPS.o ............/usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I../../.././doc/manual ../../.././doc/manual/R-intro.texi ....i686-tld-linux-gcc -shared -L../../../../lib -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -o grDevices.so axis_scales.o chull.o devices.o init.o stubs.o colors.o devCairo.o devPicTeX.o devPS.o devQuartz.o -lz -L../../../../lib -lR .make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' ../../../../library/grDevices/libs/grDevices.so is unchanged make[7]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[8]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[9]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[9]: 'cairo.so' is up to date. make[9]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[8]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[7]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src/cairo' make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' .make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grDevices' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' building package 'graphics' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/graphics' all.R is unchanged .Warning: Your system is mis-configured: '/etc/localtime' is not a symlink collecting LaTeX docs for package 'grDevices' ... .Converting parsed Rd's to LaTeX ..../usr/bin/texi2any --enable-encoding -D UseExternalXrefs -I../../.././doc/manual ../../.././doc/manual/R-ints.texi ...Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) 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make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' building package 'stats' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' all.R is unchanged Warning: Your system is mis-configured: '/etc/localtime' is not a symlink .....Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) .Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' ../../../../library/stats/libs/stats.so is unchanged make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats/src' make[5]: Leaving directory 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Converting parsed Rd's to LaTeX ..make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/datasets' .collecting LaTeX docs for package 'stats' ... ...Converting parsed Rd's to LaTeX ..make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/datasets' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' building package 'methods' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' all.R is unchanged Warning: Your system is mis-configured: '/etc/localtime' is not a symlink ....... Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) .Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' .make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' ../../../../library/methods/libs/methods.so is unchanged make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[4]: Nothing to be done for 'RfilesLazy'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/methods' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' building package 'grid' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/grid' all.R is unchanged .collecting LaTeX docs for package 'datasets' ... .. Converting parsed Rd's to LaTeX ..collecting LaTeX docs for package 'methods' ... ..Converting parsed Rd's to LaTeX ........ ..collecting LaTeX docs for package 'grid' ... .Converting parsed Rd's to LaTeX ................... .. collecting LaTeX docs for package 'splines' ... .Converting parsed Rd's to LaTeX .collecting LaTeX docs for package 'stats4' ... .. Converting parsed Rd's to LaTeX . collecting LaTeX docs for package 'tcltk' ... ..Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'compiler' ... ..Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'MASS' ... .collecting LaTeX docs for package 'parallel' ... Converting parsed Rd's to LaTeX .Converting parsed Rd's to LaTeX ...... collecting LaTeX docs for package 'lattice' ... ...Converting parsed Rd's to LaTeX ............. ..collecting LaTeX docs for package 'Matrix' ... ...Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'nlme' ... .Converting parsed Rd's to LaTeX ....... .collecting LaTeX docs for package 'survival' ... ..Converting parsed Rd's to LaTeX ............................... collecting LaTeX docs for package 'boot' ... .collecting LaTeX docs for package 'cluster' ... Converting parsed Rd's to LaTeX .Converting parsed Rd's to LaTeX ................... collecting LaTeX docs for package 'codetools' ... . .collecting LaTeX docs for package 'foreign' ... Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'KernSmooth' ... collecting LaTeX docs for package 'rpart' ... Converting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX .Converting parsed Rd's to LaTeX collecting LaTeX docs for package 'class' ... collecting LaTeX docs for package 'nnet' ... .Converting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX .. collecting LaTeX docs for package 'spatial' ... collecting LaTeX docs for package 'mgcv' ... TEXINPUTS="../../.././doc/manual:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf ../../.././doc/manual/R-FAQ.texi Converting parsed Rd's to LaTeX Converting parsed Rd's to LaTeX .. TEXINPUTS="../../.././doc/manual:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf ../../.././doc/manual/R-admin.texi This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [1{/usr/share/texmf/fonts/map/pd ftex/updmap/pdftex.map}] [-1] Chapter 1 Cross reference values unknown; you must run TeX again. Chapter 2 [1] [2] [3] [4] [5] Underfull \hbox (badness 3158) in paragraph at lines 528--541 []@textrm Debian pack-ages, main-tained by Dirk Ed-del-buet-tel, have long been part of Underfull \hbox (badness 3769) in paragraph at lines 562--564 []@textrm See [][]@texttt https://CRAN.R-project.org/bin/linux/suse/README.html [][][] @textrm for in-for-ma-tion [6] Underfull \hbox (badness 10000) in paragraph at lines 624--627 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- Underfull \hbox (badness 8132) in paragraph at lines 624--627 @textrm gram-ming with R''. Springer, New York, ISBN 978-0-387-75935-7, Underfull \hbox (badness 10000) in paragraph at lines 632--635 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 632--635 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 2846) in paragraph at lines 651--654 []@textrm William N. Ven-ables and Brian D. Rip-ley (2002), ``Mod-ern Ap-plied Underfull \hbox (badness 10000) in paragraph at lines 651--654 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, [7] [8] Overfull \hbox (59.99986pt too wide) in paragraph at lines 792--797 @textrm and is mir-rored daily to many sites around the world. See [][]@texttt https://CRAN.R-project.org/mirrors.html[][][] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16] [17] Overfull \hbox (11.28497pt too wide) in paragraph at lines 1524--1527 []@textrm See also [][]@texttt https://en.wikipedia.org/wiki/R_programming_lang uage#Commercialized_ Chapter 4 [18] Underfull \hbox (badness 7851) in paragraph at lines 1531--1535 []@textrm Please re-fer to the @reducedrm CRAN @textrm task view on ``Web Tech- nolo-gies and Ser-vices'' Underfull \hbox (badness 10000) in paragraph at lines 1531--1535 @textrm ([][]@texttt https://CRAN.R-project.org/view=WebTechnologies[][][]@text rm ), specif-i-cally sec-tion Underfull \hbox (badness 4634) in paragraph at lines 1536--1547 []@textrm Early ref-er-ences on R web in-ter-faces in-clude Jeff Ban-field (199 9), ``Rweb: Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm Web-based Sta-tis-ti-cal Anal-y-sis'' ([][]@texttt https://www.jstatsof t.org/v004/i01[][][]@textrm ), Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm David Firth (2003), ``CGI-withR: Fa-cil-i-ties for pro-cess-ing web for ms us- Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm ing R'' ([][]@texttt https://www.jstatsoft.org/v008/i10[][][]@textrm ), and An-gelo Mi-neo and Underfull \hbox (badness 4752) in paragraph at lines 1536--1547 @textrm Al-fredo Pon-tillo (2006), ``Us-ing R via PHP for Teach-ing Pur-poses: R-php'' Chapter 5 [19] [20] [21] [22] [23] Chapter 6 [24] [25] Chapter 7 [26] [27] [28] [29] [30] [31] [32] [33] [34] [35] [36] [37] [38] [39] [40] Underfull \hbox (badness 6559) in paragraph at lines 3271--3279 []@textrm When R trans-fers files over @reducedrm HTTP @textrm (e.g., us-ing th e @texttt install.packages()[] @textrm or Underfull \hbox (badness 10000) in paragraph at lines 3271--3279 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the Underfull \hbox (badness 3364) in paragraph at lines 3271--3279 @textrm `@texttt download.file.method[]@textrm '[] op-tion. There are sev-eral meth-ods avail-able and the [41] Chapter 8 [42] Chapter 9 [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3510--3518 [][]@texttt https://en.wikipedia.org/wiki/Reproducibility[][][]@textrm ) the pr ob-lem, prefer-ably the Chapter 10 [45] [46] [47]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, ) (see the transcript file for additional information) page headings, ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map>< /usr/share/texmf-dist/fonts/type1/bluesky/cm/cmmi7.pfb>.]< /usr/share/texmf-dist/fonts/type1/bluesky/cm/cmti10.pfb [8]> Underfull \hbox (badness 2932) in paragraph at lines 837--847 []@textrm When sub-architectures are used the ver-sion of @texttt Rscript[] @te xtrm in e.g. `@texttt /usr/bin[]@textrm '[] will Underfull \hbox (badness 6775) in paragraph at lines 837--847 @textrm be the last in-stalled, but architecture-specific ver-sions will be ava il-able in e.g. [9 Underfull \hbox (badness 10000) in paragraph at lines 929--934 []@textrm One that may be use-ful when work-ing on R it-self is the op-tion Underfull \hbox (badness 10000) in paragraph at lines 929--934 @textrm `@texttt --disable-byte-compiled-packages[]@textrm '[], which en-sures that the base and rec-om- [10 [26 Underfull \hbox (badness 3907) in paragraph at lines 2642--2650 []@textrm Utilities such as @texttt install.packages[] @textrm can be pointed a t any @reducedrm CRAN@textrm -style repos-i-tory, Underfull \hbox (badness 2158) in paragraph at lines 2642--2650 @textrm such as [][]@texttt http://www.stats.ox.ac.uk/pub/RWin[][][]@textrm : t his must be an URL scheme that [30] Chapter 7 [31] Output written on R-FAQ.pdf (49 pages, 322368 bytes). Transcript written on R-FAQ.log. [32] [33] Chapter 8 [34] Chapter 9 [35] [36] [37] Appendix A [38] [39] Overfull \hbox (27.8098pt too wide) in paragraph at lines 3371--3371 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] Underfull \hbox (badness 6927) in paragraph at lines 3392--3398 [][][]@smallrm Such as @keyrm GNU @smalltt tar[] @smallrm 1.15 or later, @small tt bsdtar[] @smallrm (from [][]@smalltt https://github.com/libarchive/libarchiv e/[][][]@smallrm , Underfull \hbox (badness 2277) in paragraph at lines 3392--3398 @smallrm as used as @smalltt tar[] @smallrm by FreeBSD and macOS 10.6 and later ) or @smalltt tar[] @smallrm from the Heir-loom Toolch-est [40] Underfull \hbox (badness 10000) in paragraph at lines 3496--3498 [][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t he De-bian/Ubuntu world: see also Underfull \hbox (badness 2409) in paragraph at lines 3493--3511 @textrm avail-able at [][]@texttt https://fedorahosted.org/liberation-fonts/[][ ][]@textrm ,$[]$ which cover the Latin, [41] Underfull \hbox (badness 3078) in paragraph at lines 3567--3573 []@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice s and func-tion @texttt embedFonts()[] @textrm use ghost-script [42] [43] [44] Underfull \hbox (badness 5077) in paragraph at lines 3809--3814 []@textrm Debian/Ubuntu sys-tems pro-vide a system-specific way to switch the B LAS in [45] [46] [47] Appendix B [48] [49] [50] [51] [52] Underfull \hbox (badness 5119) in paragraph at lines 4531--4535 []@textrm Other vari-ables of-ten set by @texttt configure[] @textrm in-clude ` @texttt MAIN_LDFLAGS[]@textrm '[], `@texttt SAFE_FFLAGS[]@textrm '[], Underfull \hbox (badness 10000) in paragraph at lines 4583--4587 [][][]@smallrm The links there have proved dif-fi-cult to ac-cess, in which cas e ei-ther point an FTP Underfull \hbox (badness 10000) in paragraph at lines 4583--4587 @smallrm client at [][]@smalltt ftp://www.eecs.harvard.edu/pub/nr/[][][] @small rm or grab the copy made avail-able at Appendix C [53] [54] [55]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. Underfull \hbox (badness 10000) in paragraph at lines 1--4868 []@textrm R has been built with Linux `@texttt ix86[]@textrm '[] and `@texttt x 86_64[]@textrm '[] C and C@texttt ++ @textrm com-pil-ers Underfull \hbox (badness 10000) in paragraph at lines 1--4868 @textrm ([][]@texttt http://clang.llvm.org[][][]@textrm ) based on the Clang fr ont-ends, in-voked by @texttt CC=clang [56] [57entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]:] pdf, fonts, Overfull \hbox (56.55324pt too wide) in paragraph at lines 4985--4985 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 4992--4992 []@texttt CPPFLAGS="-isystem /Library/Developer/CommandLineTools/SDKs/MacOSX.s dk/usr/include"[] Underfull \hbox (badness 10000) in paragraph at lines 5009--5013 []@textrm An X sub-system is re-quired un-less con-fig-ur-ing us-ing `@texttt - -without-x[]@textrm '[]: see Underfull \hbox (badness 2221) in paragraph at lines 5009--5013 [][]@texttt https://xquartz.macosforge.org/[][][]@textrm . R's @texttt configur e[] @textrm script can be told to look for [58] Underfull \hbox (badness 4001) in paragraph at lines 5051--5062 []@textrm There are in-stallers$[]$ for For-tran com-pil-ers for El Cap-i-tan, Sierra and Mo-jave Underfull \hbox (badness 10000) in paragraph at lines 5051--5062 @textrm at [][]@texttt https://github.com/fxcoudert/gfortran-for-macOS/releases /download/6.1/ Underfull \hbox (badness 10000) in paragraph at lines 5051--5062 @texttt gfortran-6.1-ElCapitan.dmg[][][]@textrm , [][]@texttt https://github.co m/fxcoudert/gfortran-for-macOS/ Underfull \hbox (badness 6204) in paragraph at lines 5051--5062 @texttt gfortran-for-macOS/releases/download/8.2/gfortran-8.2-Mojave.dmg[][][]@ textrm . (An Ap-ple Underfull \hbox (badness 2189) in paragraph at lines 5051--5062 @textrm pack-age for 6.1 is also avail-able at [][]@texttt https://cran.r-proje ct.org/bin/macosx/tools/ Underfull \hbox (badness 4595) in paragraph at lines 5083--5094 []@textrm Current @reducedrm CRAN @textrm bi-nary dis-tri-bu-tions use the buil d of @texttt clang[] @textrm 6.0.0 con-tained in Underfull \hbox (badness 10000) in paragraph at lines 5083--5094 [][]@texttt https://cran.r-project.org/bin/macosx/tools/clang-6.0.0.pkg[][][]@t extrm . Other re-cent Overfull \hbox (56.55324pt too wide) in paragraph at lines 5096--5096 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] [59] page headings, tables, conditionals, indexing, sectioning, toc, environments, Overfull \hbox (85.29668pt too wide) in paragraph at lines 5133--5133 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5176--5186 []@textrm The T[]X im-ple-men-ta-tion used by the de-vel-op-ers is Mac-TeX Underfull \hbox (badness 2600) in paragraph at lines 5176--5186 @textrm ([][]@texttt https://www.tug.org/mactex/[][][]@textrm ): the full in-st al-la-tion is about 5GB, but a smaller [60 defuns, macros, cross references,] insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, [61 and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.aux] [62] Underfull \hbox (badness 3428) in paragraph at lines 5415--5419 @textrm than other plat-forms. This makes it de-sir-able to build PCRE with the op-tion [63] [64]) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) Overfull \hbox (119.7888pt too wide) in paragraph at lines 5578--5578 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5635--5639 []@textrm Note that paths such as `@texttt /opt/csw/lib[]@textrm '[], `@texttt /usr/local/lib/amd64[]@textrm '[] and Underfull \hbox (badness 5050) in paragraph at lines 5635--5639 @textrm `@texttt /opt/csw/lib/amd64[]@textrm '[] may need to be in the []@textt t LD_LIBRARY_PATH[] @textrm dur-ing con-fig-u-ra- [65] [1{/usr/share/texmf/fonts/map/pd ftex/updmap/pdftex.map Underfull \hbox (badness 4492) in paragraph at lines 5715--5721 @textrm PACK code to avoid com-pu-ta-tions en-tirely in extended-precision reg- is-ters, so file [66] Appendix D [67] [68] Underfull \hbox (badness 5302) in paragraph at lines 5921--5924 []@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te xtrm to a value in-clud-ing [69] (Function and variable index) [70] (Concept index) [71] (Environment variable index) [72] [73] ) (see the transcript file for additional information) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.toc [-1] Output written on R-admin.pdf (76 pages, 458157 bytes). Transcript written on R-admin.log. [-2]) [-3] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.toc) Chapter 1 Chapter 2 [1] [2] [3] [4] [5] Underfull \hbox (badness 3158) in paragraph at lines 528--541 []@textrm Debian pack-ages, main-tained by Dirk Ed-del-buet-tel, have long been part of Underfull \hbox (badness 3769) in paragraph at lines 562--564 []@textrm See [][]@texttt https://CRAN.R-project.org/bin/linux/suse/README.html [][][] @textrm for in-for-ma-tion [6] Underfull \hbox (badness 10000) in paragraph at lines 624--627 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- Underfull \hbox (badness 8132) in paragraph at lines 624--627 @textrm gram-ming with R''. Springer, New York, ISBN 978-0-387-75935-7, Underfull \hbox (badness 10000) in paragraph at lines 632--635 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 632--635 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 2846) in paragraph at lines 651--654 []@textrm William N. Ven-ables and Brian D. Rip-ley (2002), ``Mod-ern Ap-plied Underfull \hbox (badness 10000) in paragraph at lines 651--654 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, [7] [8] Overfull \hbox (59.99986pt too wide) in paragraph at lines 792--797 @textrm and is mir-rored daily to many sites around the world. See [][]@texttt https://CRAN.R-project.org/mirrors.html[][][] [9] Chapter 3 [10] [11] [12] [13] [14] [15] [16This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. ] [17] Overfull \hbox (11.28497pt too wide) in paragraph at lines 1524--1527 []@textrm See also [][]@texttt https://en.wikipedia.org/wiki/R_programming_lang uage#Commercialized_ Chapter 4 [18] Underfull \hbox (badness 7851) in paragraph at lines 1531--1535 []@textrm Please re-fer to the @reducedrm CRAN @textrm task view on ``Web Tech- nolo-gies and Ser-vices'' Underfull \hbox (badness 10000) in paragraph at lines 1531--1535 @textrm ([][]@texttt https://CRAN.R-project.org/view=WebTechnologies[][][]@text rm ), specif-i-cally sec-tion Underfull \hbox (badness 4634) in paragraph at lines 1536--1547 []@textrm Early ref-er-ences on R web in-ter-faces in-clude Jeff Ban-field (199 9), ``Rweb: Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm Web-based Sta-tis-ti-cal Anal-y-sis'' ([][]@texttt https://www.jstatsof t.org/v004/i01[][][]@textrm ), Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm David Firth (2003), ``CGI-withR: Fa-cil-i-ties for pro-cess-ing web for ms us- Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm ing R'' ([][]@texttt https://www.jstatsoft.org/v008/i10[][][]@textrm ), and An-gelo Mi-neo and Underfull \hbox (badness 4752) in paragraph at lines 1536--1547 @textrm Al-fredo Pon-tillo (2006), ``Us-ing R via PHP for Teach-ing Pur-poses: R-php'' Chapter 5 [19]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.t2d/pdf/xtr/R-admin.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, [20] [21 page headings, tables, conditionals, indexing,] sectioning, toc, environments, defuns, [22 macros, cross references, insertions,] (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, [23] formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.aux Chapter 6 [24] [25] Chapter 7 [26]) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi [27 (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)]) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi [28) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map] [29] [30] [31] [32] [33] [34].}] [35 [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.toc] [36] [-1] [37] [38 [-2]]) [39 [-3]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.toc [40]) Chapter 1 Underfull \hbox (badness 6559) in paragraph at lines 3271--3279 []@textrm When R trans-fers files over @reducedrm HTTP @textrm (e.g., us-ing th e @texttt install.packages()[] @textrm or Underfull \hbox (badness 10000) in paragraph at lines 3271--3279 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the Underfull \hbox (badness 3364) in paragraph at lines 3271--3279 @textrm `@texttt download.file.method[]@textrm '[] op-tion. There are sev-eral meth-ods avail-able and the [41] Chapter 8 [42] Underfull \hbox (badness 10000) in paragraph at lines 152--157 []@textrm The tar-balls are avail-able from [][]@texttt https://stat.ethz.ch/R/ daily[][][]@textrm . Down-load Underfull \hbox (badness 4303) in paragraph at lines 180--186 @textrm to check out `@texttt r-devel[]@textrm '[] into di-rec-tory @textsl pat h @textrm (which will be cre-ated if nec-es-sary). Underfull \hbox (badness 2181) in paragraph at lines 180--186 @textrm The al-pha, beta and RC ver-sions of an up-com-ing @textsl x.y.0 @textr m re-lease are avail-able from [1] Chapter 2 [2] Chapter 9 [43] [44 [3]] [4 Underfull \hbox (badness 10000) in paragraph at lines 3510--3518 [][]@texttt https://en.wikipedia.org/wiki/Reproducibility[][][]@textrm ) the pr ob-lem, prefer-ably the Chapter 10 [45]] [46] [47] [5 ) (see the transcript file for additional information)]< /usr/share/texmf-dist/fonts/type1/bluesky/cm/cmmi7.pfb]>]< /usr/share/texmf-dist/fonts/type1/bluesky/cm/cmti10.pfb>] [11 [12] Chapter 3 [13] Output written on R-FAQ.pdf (51 pages, 374991 bytes). Transcript written on R-FAQ.log. [14] Underfull \hbox (badness 7685) in paragraph at lines 1322--1326 []@textrm or per-haps bet-ter, set the en-vi-ron-ment vari-able @texttt TAR_OP TIONS[] @textrm to the value [15] Underfull \hbox (badness 10000) in paragraph at lines 1454--1460 @textrm ics li-braries built by Si-mon Ur-banek at [][]@texttt https://www.rfor ge.net/Cairo/files/ Underfull \hbox (badness 10000) in paragraph at lines 1476--1482 @textrm The first should be un-com-mented and the sec-ond set to the top-level di- Underfull \hbox (badness 10000) in paragraph at lines 1476--1482 @textrm rec-tory of a suit-ably pack-aged bi-nary build of ICU, for ex-am-ple t hat at Underfull \hbox (badness 10000) in paragraph at lines 1476--1482 [][]@texttt https://www.stats.ox.ac.uk/pub/Rtools/goodies/ICU_531.zip[][][]@tex trm . De-pend-ing on [16] Underfull \hbox (badness 2582) in paragraph at lines 1539--1543 []@textrm Parallel check-ing of pack-age sources (part of @texttt make check-de vel[] @textrm and @texttt make check- Underfull \hbox (badness 10000) in paragraph at lines 1576--1578 [][][]@smallrm Suitable dis-tri-bu-tions in-clude Straw-berry Perl, [][]@smallt t http://strawberryperl.com/[][][] @smallrm and Ac-tivePerl, [17] [18] Chapter 4 [19] Underfull \hbox (badness 10000) in paragraph at lines 1792--1796 []@textrm Installers for R-patched and R-devel are usu-ally avail-able from Underfull \hbox (badness 4940) in paragraph at lines 1792--1796 [][]@texttt https://mac.R-project.org[][][]@textrm . (Some of these pack-ages a re un-signed: to in-stall Underfull \hbox (badness 10000) in paragraph at lines 1820--1825 []@textrm Various parts of the build re-quire XQuartz to be in-stalled: see Underfull \hbox (badness 3009) in paragraph at lines 1820--1825 [][]@texttt https://xquartz.macosforge.org/[][][]@textrm . These in-clude the @ textbf tcltk @textrm pack-age and the @texttt X11[] Underfull \hbox (badness 2111) in paragraph at lines 1820--1825 @textrm de-vice: at-tempt-ing to use these with-out XQuartz will re-mind you. A lso for the Underfull \hbox (badness 10000) in paragraph at lines 1872--1876 @texttt library/mac/releasenotes/MacOSX/WhatsNewInOSX/Articles/MacOSX10_9.html[ ][][]@textrm ) which [20] Underfull \hbox (badness 10000) in paragraph at lines 1888--1890 @textrm (see [][]@texttt https://developer.apple.com/library/mac/releasenotes/ MacOSX/ Underfull \hbox (badness 3668) in paragraph at lines 1917--1929 []@textrm The in-stal-la-tion con-sists of up to four Ap-ple pack-ages:$[]$ @te xttt org.r-project.R.el- Underfull \hbox (badness 10000) in paragraph at lines 1917--1929 @texttt capitan.fw.pkg[]@textrm , @texttt org.r-project.R.el-capitan.GUI.pkg[]@ textrm , @texttt org.r-project.x86_ [21] Chapter 5 [22] Chapter 6 [23] [24] [25] [26]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. [27] [28] [29] Underfull \hbox (badness 3907) in paragraph at lines 2642--2650 []@textrm Utilities such as @texttt install.packages[] @textrm can be pointed a t any @reducedrm CRAN@textrm -style repos-i-tory, Underfull \hbox (badness 2158) in paragraph at lines 2642--2650 @textrm such as [][]@texttt http://www.stats.ox.ac.uk/pub/RWin[][][]@textrm : t his must be an URL scheme that [30] Chapter 7 [31] [32] [33] Chapter 8 [34] Chapter 9 [35] [36entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.t2d/pdf/xtr/R-FAQ.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]:] pdf, fonts, [37] Appendix A [38] page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex [39 This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.aux]) (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) Overfull \hbox (27.8098pt too wide) in paragraph at lines 3371--3371 []@texttt ./configure --enable-utf --enable-unicode-properties --enable-jit -- disable-cpp[] Underfull \hbox (badness 6927) in paragraph at lines 3392--3398 [][][]@smallrm Such as @keyrm GNU @smalltt tar[] @smallrm 1.15 or later, @small tt bsdtar[] @smallrm (from [][]@smalltt https://github.com/libarchive/libarchiv e/[][][]@smallrm , Underfull \hbox (badness 2277) in paragraph at lines 3392--3398 @smallrm as used as @smalltt tar[] @smallrm by FreeBSD and macOS 10.6 and later ) or @smalltt tar[] @smallrm from the Heir-loom Toolch-est [40 [1{/usr/share/texmf/fonts/map/pd ftex/updmap/pdftex.map] Underfull \hbox (badness 10000) in paragraph at lines 3496--3498 [][][]@smallrm also known as @smalltt ttf-mscorefonts-installer[] @smallrm in t he De-bian/Ubuntu world: see also Underfull \hbox (badness 2409) in paragraph at lines 3493--3511 @textrm avail-able at [][]@texttt https://fedorahosted.org/liberation-fonts/[][ ][]@textrm ,$[]$ which cover the Latin, [41] Underfull \hbox (badness 3078) in paragraph at lines 3567--3573 []@textrm The @texttt bitmap[] @textrm and @texttt dev2bitmap[] @textrm de-vice s and func-tion @texttt embedFonts()[] @textrm use ghost-script [42] [43]}] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.toc [44] [-1] Underfull \hbox (badness 5077) in paragraph at lines 3809--3814 []@textrm Debian/Ubuntu sys-tems pro-vide a system-specific way to switch the B LAS in [45 [-2]]) [-3 [46] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.toc]) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-FAQ.toc [47) Chapter 1] Chapter 2 [1] [2] Appendix B [48 [3]] [49] [4] [50] [51] [52] Underfull \hbox (badness 5119) in paragraph at lines 4531--4535 []@textrm Other vari-ables of-ten set by @texttt configure[] @textrm in-clude ` @texttt MAIN_LDFLAGS[]@textrm '[], `@texttt SAFE_FFLAGS[]@textrm '[], Underfull \hbox (badness 10000) in paragraph at lines 4583--4587 [][][]@smallrm The links there have proved dif-fi-cult to ac-cess, in which cas e ei-ther point an FTP Underfull \hbox (badness 10000) in paragraph at lines 4583--4587 @smallrm client at [][]@smalltt ftp://www.eecs.harvard.edu/pub/nr/[][][] @small rm or grab the copy made avail-able at Appendix C [53] [54] [55 [5]] Underfull \hbox (badness 3158) in paragraph at lines 528--541 []@textrm Debian pack-ages, main-tained by Dirk Ed-del-buet-tel, have long been part of Underfull \hbox (badness 3769) in paragraph at lines 562--564 []@textrm See [][]@texttt https://CRAN.R-project.org/bin/linux/suse/README.html [][][] @textrm for in-for-ma-tion [6 Underfull \hbox (badness 10000) in paragraph at lines 1--4868 []@textrm R has been built with Linux `@texttt ix86[]@textrm '[] and `@texttt x 86_64[]@textrm '[] C and C@texttt ++ @textrm com-pil-ers Underfull \hbox (badness 10000) in paragraph at lines 1--4868 @textrm ([][]@texttt http://clang.llvm.org[][][]@textrm ) based on the Clang fr ont-ends, in-voked by @texttt CC=clang [56]] Underfull \hbox (badness 10000) in paragraph at lines 624--627 []@textrm John M. Cham-bers (2008), ``Soft-ware for Data Anal-y-sis: Pro- Underfull \hbox (badness 8132) in paragraph at lines 624--627 @textrm gram-ming with R''. Springer, New York, ISBN 978-0-387-75935-7, Underfull \hbox (badness 10000) in paragraph at lines 632--635 []@textrm Robert Gen-tle-man (2008), ``R Pro-gram-ming for Bioin-for-mat-ics'' . Underfull \hbox (badness 7379) in paragraph at lines 632--635 @textrm Chap-man & Hall/CRC, Boca Ra-ton, FL, ISBN 978-1-420-06367-7, Underfull \hbox (badness 2846) in paragraph at lines 651--654 []@textrm William N. Ven-ables and Brian D. Rip-ley (2002), ``Mod-ern Ap-plied Underfull \hbox (badness 10000) in paragraph at lines 651--654 @textrm Statis-tics with S'' (4th edi-tion). Springer, ISBN 0-387-95457-0, [7] [57 [8]] Overfull \hbox (59.99986pt too wide) in paragraph at lines 792--797 @textrm and is mir-rored daily to many sites around the world. See [][]@texttt https://CRAN.R-project.org/mirrors.html[][][] [9 Overfull \hbox (56.55324pt too wide) in paragraph at lines 4985--4985 []@texttt /Library/Developer/CommandLineTools/Packages/macOS_SDK_headers_for_m acOS_10.14.pkg \[] Overfull \hbox (50.80455pt too wide) in paragraph at lines 4992--4992 []@texttt CPPFLAGS="-isystem /Library/Developer/CommandLineTools/SDKs/MacOSX.s dk/usr/include"[] Underfull \hbox (badness 10000) in paragraph at lines 5009--5013 []@textrm An X sub-system is re-quired un-less con-fig-ur-ing us-ing `@texttt - -without-x[]@textrm '[]: see Underfull \hbox (badness 2221) in paragraph at lines 5009--5013 [][]@texttt https://xquartz.macosforge.org/[][][]@textrm . R's @texttt configur e[] @textrm script can be told to look for [58] Underfull \hbox (badness 4001) in paragraph at lines 5051--5062 []@textrm There are in-stallers$[]$ for For-tran com-pil-ers for El Cap-i-tan, Sierra and Mo-jave Underfull \hbox (badness 10000) in paragraph at lines 5051--5062 @textrm at [][]@texttt https://github.com/fxcoudert/gfortran-for-macOS/releases /download/6.1/ Underfull \hbox (badness 10000) in paragraph at lines 5051--5062 @texttt gfortran-6.1-ElCapitan.dmg[][][]@textrm , [][]@texttt https://github.co m/fxcoudert/gfortran-for-macOS/ Underfull \hbox (badness 6204) in paragraph at lines 5051--5062 @texttt gfortran-for-macOS/releases/download/8.2/gfortran-8.2-Mojave.dmg[][][]@ textrm . (An Ap-ple Underfull \hbox (badness 2189) in paragraph at lines 5051--5062 @textrm pack-age for 6.1 is also avail-able at [][]@texttt https://cran.r-proje ct.org/bin/macosx/tools/ Underfull \hbox (badness 4595) in paragraph at lines 5083--5094 []@textrm Current @reducedrm CRAN @textrm bi-nary dis-tri-bu-tions use the buil d of @texttt clang[] @textrm 6.0.0 con-tained in Underfull \hbox (badness 10000) in paragraph at lines 5083--5094 [][]@texttt https://cran.r-project.org/bin/macosx/tools/clang-6.0.0.pkg[][][]@t extrm . Other re-cent Overfull \hbox (56.55324pt too wide) in paragraph at lines 5096--5096 []@texttt PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconfig:/usr /lib/pkgconfig \[] [59] Overfull \hbox (85.29668pt too wide) in paragraph at lines 5133--5133 []@texttt export PKG_CONFIG_PATH=/opt/X11/lib/pkgconfig:/usr/local/lib/pkgconf ig:/usr/lib/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5176--5186 []@textrm The T[]X im-ple-men-ta-tion used by the de-vel-op-ers is Mac-TeX Underfull \hbox (badness 2600) in paragraph at lines 5176--5186 @textrm ([][]@texttt https://www.tug.org/mactex/[][][]@textrm ): the full in-st al-la-tion is about 5GB, but a smaller [60]] [61] Chapter 3 [10 [62]] [11]. [12 Underfull \hbox (badness 3428) in paragraph at lines 5415--5419 @textrm than other plat-forms. This makes it de-sir-able to build PCRE with the op-tion [63] [13] [14] [15] [16]] [17 [64] Overfull \hbox (11.28497pt too wide) in paragraph at lines 1524--1527 []@textrm See also [][]@texttt https://en.wikipedia.org/wiki/R_programming_lang uage#Commercialized_ Chapter 4 [18]] Underfull \hbox (badness 7851) in paragraph at lines 1531--1535 []@textrm Please re-fer to the @reducedrm CRAN @textrm task view on ``Web Tech- nolo-gies and Ser-vices'' Underfull \hbox (badness 10000) in paragraph at lines 1531--1535 @textrm ([][]@texttt https://CRAN.R-project.org/view=WebTechnologies[][][]@text rm ), specif-i-cally sec-tion Underfull \hbox (badness 4634) in paragraph at lines 1536--1547 []@textrm Early ref-er-ences on R web in-ter-faces in-clude Jeff Ban-field (199 9), ``Rweb: Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm Web-based Sta-tis-ti-cal Anal-y-sis'' ([][]@texttt https://www.jstatsof t.org/v004/i01[][][]@textrm ), Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm David Firth (2003), ``CGI-withR: Fa-cil-i-ties for pro-cess-ing web for ms us- Underfull \hbox (badness 10000) in paragraph at lines 1536--1547 @textrm ing R'' ([][]@texttt https://www.jstatsoft.org/v008/i10[][][]@textrm ), and An-gelo Mi-neo and Underfull \hbox (badness 4752) in paragraph at lines 1536--1547 @textrm Al-fredo Pon-tillo (2006), ``Us-ing R via PHP for Teach-ing Pur-poses: R-php'' Chapter 5 [19] Overfull \hbox (119.7888pt too wide) in paragraph at lines 5578--5578 []@texttt PKG_CONFIG_PATH= /usr/local/lib/amd64/pkgconfig:/opt/csw/lib/64/pkgc onfig:/usr/lib/64/pkgconfig[] Underfull \hbox (badness 10000) in paragraph at lines 5635--5639 []@textrm Note that paths such as `@texttt /opt/csw/lib[]@textrm '[], `@texttt /usr/local/lib/amd64[]@textrm '[] and Underfull \hbox (badness 5050) in paragraph at lines 5635--5639 @textrm `@texttt /opt/csw/lib/amd64[]@textrm '[] may need to be in the []@textt t LD_LIBRARY_PATH[] @textrm dur-ing con-fig-u-ra- [65] [20 Underfull \hbox (badness 4492) in paragraph at lines 5715--5721 @textrm PACK code to avoid com-pu-ta-tions en-tirely in extended-precision reg- is-ters, so file [66]] Appendix D [67] [21] [68] [22] [23] Underfull \hbox (badness 5302) in paragraph at lines 5921--5924 []@textrm You may need to set the en-vi-ron-ment vari-able @texttt CYGWIN[] @te xtrm to a value in-clud-ing [69 Chapter 6 [24]] (Function and variable index) [70] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.vrs [25) (Concept index) [71]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.cps Chapter 7 [26]) (Environment variable index) [72 [27]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-admin.ens [28]) [73 [29]] ) (see the transcript file for additional information)]] [34 [37] Output written on R-admin.pdf (78 pages, 539830 bytes). Transcript written on R-admin.log. [38] [39] [40] Underfull \hbox (badness 6559) in paragraph at lines 3271--3279 []@textrm When R trans-fers files over @reducedrm HTTP @textrm (e.g., us-ing th e @texttt install.packages()[] @textrm or Underfull \hbox (badness 10000) in paragraph at lines 3271--3279 @texttt download.file()[] @textrm func-tion), a down-load method is cho-sen bas ed on the Underfull \hbox (badness 3364) in paragraph at lines 3271--3279 @textrm `@texttt download.file.method[]@textrm '[] op-tion. There are sev-eral meth-ods avail-able and the [41] Chapter 8 [42] Chapter 9 [43] [44] Underfull \hbox (badness 10000) in paragraph at lines 3510--3518 [][]@texttt https://en.wikipedia.org/wiki/Reproducibility[][][]@textrm ) the pr ob-lem, prefer-ably the Chapter 10 [45] [46] [47] ) (see the transcript file for additional information)< /usr/share/texmf-dist/fonts/type1/bluesky/cm/cmmi7.pfb>< /usr/share/texmf-dist/fonts/type1/bluesky/cm/cmti10.pfb> Output written on R-FAQ.pdf (51 pages, 374994 bytes). Transcript written on R-FAQ.log. TEXINPUTS="../../.././doc/manual:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf ../../.././doc/manual/R-data.texi TEXINPUTS="../../.././doc/manual:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf ../../.././doc/manual/R-exts.texi This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex).) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map}] [2] [-1] (Acknowledgements) Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL[][]| Chapter 1 [1] Cross reference values unknown; you must run TeX again. [2] [3] [4] Chapter 2 [5] [6] [7] [8This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. ] [9]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: [10] pdf, fonts, Chapter 3 [11] page headings, tables, [12 conditionals, indexing, sectioning,] toc, environments, Underfull \hbox (badness 2088) in paragraph at lines 1104--1112 []@textrm Octave is a nu-mer-i-cal lin-ear al-ge-bra sys-tem ([][]@texttt http: //www.octave.org[][][]@textrm ), and func-tion Chapter 4 defuns, [13 macros,] cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, Underfull \hbox (badness 3058) in paragraph at lines 1196--1202 @textrm data-bases and even text files (pos-si-bly com-pressed). Open Data-base Con-nec-tiv-ity [14 formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)] [15) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map] Underfull \hbox (badness 10000) in paragraph at lines 1355--1359 []@textrm Package [][]@textbf RMongo[][] @textrm pro-vides an R in-ter-face to a Java client for `Mon-goDB' Underfull \hbox (badness 10000) in paragraph at lines 1355--1359 @textrm ([][]@texttt https://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data- bases, which are queried us-ing [16] Underfull \hbox (badness 3690) in paragraph at lines 1417--1421 []@textrm These are con-ve-nient in-ter-faces to read/write/test/delete ta-bles in the data-base. [17] [18] Chapter 5 [19] Underfull \hbox (badness 3098) in paragraph at lines 1755--1761 @textrm to @reducedrm NASA@textrm 's HDF5 (Hi-er-ar-chi-cal Data For-mat, see [ ][]@texttt https://www.hdfgroup.org/HDF5/[][][]@textrm ) Underfull \hbox (badness 10000) in paragraph at lines 1755--1761 @textrm and to UCAR's netCDF data files (net-work Com-mon Data Form, see Underfull \hbox (badness 2111) in paragraph at lines 1781--1794 @textrm been adopted for the 'Xbase' fam-ily of data-bases, cov-er-ing dBase, C lip-per, Fox-Pro Underfull \hbox (badness 3098) in paragraph at lines 1781--1794 @textrm (see for ex-am-ple [][]@texttt http://www.digitalpreservation.gov/forma ts/fdd/fdd000325.shtml[][][] Chapter 6 [20]}] [2] [-1] (Acknowledgements) Chapter 7 Chapter 1 [21 [1]] Cross reference values unknown; you must run TeX again. [2] [22] Underfull \hbox (badness 4660) in paragraph at lines 280--283 []@textrm For the con-ven-tions for files `@texttt NEWS[]@textrm '[] and `@text tt ChangeLog[]@textrm '[] in the @reducedrm GNU @textrm project see [3 [23]] Underfull \hbox (badness 10000) in paragraph at lines 370--380 [][]@texttt https://www.debian.org/doc/debian-policy/index.html#document-ch-con trolfields[][][]@textrm : [4 Underfull \hbox (badness 2150) in paragraph at lines 2094--2098 []@textrm A sum-mary of all the con-nec-tions cur-rently opened by the user can be found by [24]] [5 Chapter 8 [25]] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6 Underfull \hbox (badness 3815) in paragraph at lines 2239--2241 []@textrm The ear-lier low-level in-ter-face is given by func-tions @texttt mak e.socket[]@textrm , @texttt read.socket[]@textrm , Chapter 9 [26]] Underfull \hbox (badness 10000) in paragraph at lines 631--644 @textrm Lit-er-a-ture Clas-si-fi-ca-tion Sys-tem, [][]@texttt https://www.aeawe b.org/econlit/jelCodes.php[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 631--644 @textrm or `@texttt Classification/MSC[]@textrm '[] or `@texttt Classification/ MSC-2010[]@textrm '[] (the Math-e-mat-ics Sub-ject [7 Underfull \hbox (badness 2012) in paragraph at lines 2278--2287 []@textrm If you do not have Ex-cel, many other pro-grams are able to read such spread- Underfull \hbox (badness 7326) in paragraph at lines 2278--2287 @textrm sheets and ex-port in a text for-mat on both Win-dows and Unix, for ex- am- Underfull \hbox (badness 10000) in paragraph at lines 2278--2287 @textrm ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[][][ ]@textrm ) and OpenOf-fice Appendix A [27]] Overfull \hbox (38.37012pt too wide) in paragraph at lines 2363--2366 @textrm B. D. Rip-ley (2001) Con-nec-tions. @textit R News@textrm , @textbf 1/1 @textrm , 16--7. [][]@texttt https://www.r-project.org/doc/Rnews/Rnews_ (Function and variable index) [28] [8 (Concept index) [29] [30]] ) (see the transcript file for additional information)] Output written on R-data.pdf (33 pages, 236185 bytes). Transcript written on R-data.log. [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1459--1466 @textrm `@texttt RnavGraph/inst/tcl[]@textrm '[], `@texttt RProtoBuf/inst/pytho n[]@textrm '[] and `@texttt emdbook/inst/BUGS[]@textrm '[] and Underfull \hbox (badness 5288) in paragraph at lines 1496--1500 @textrm then down-load the sources from [][]@texttt https://sourceforge.net/pro jects/tcllib/files/ [17] [18] [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1921--1926 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines which Underfull \hbox (badness 2875) in paragraph at lines 1921--1926 @textrm were cur-rent in 2003: a list of which rou-tines are in-cluded is in f ile [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 2121--2123 [][][][][]@smalltt http://www.openmp.org/[][][]@smallrm , [][]@smalltt https:// en.wikipedia.org/wiki/OpenMP[][][]@smallrm , [][]@smalltt https://computing.lln l.gov/ [24] [25] [26] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2335--2335 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2337--2337 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [27] [28] [29] Underfull \hbox (badness 10000) in paragraph at lines 2586--2588 [][][]@smallrm The changes are linked from [][]@smalltt https://isocpp.org/std/ standing-documents/ [30] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2719--2719 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [31] Underfull \hbox (badness 10000) in paragraph at lines 2767--2773 [][][]@smallrm See [][]@smalltt https://isocpp.org/std/standing-documents/sd-6- sg10-feature-test-recommendations[][][] @smallrm or [32]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. [33] [34]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, [35 fonts,] [36 page headings, tables, conditionals,] indexing, sectioning, toc, environments, defuns, macros, Underfull \hbox (badness 2809) in paragraph at lines 3267--3273 @textrm (or set the en-vi-ron-ment vari-able @texttt _R_BUILD_KEEP_EMPTY_DIRS_[ ] @textrm to `@texttt TRUE[]@textrm '[], or have a [37 cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization,] formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.aux [38]) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [39) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi)] [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map Underfull \hbox (badness 4556) in paragraph at lines 3504--3512 @textrm Others you may see are @texttt \VignettePackage[] @textrm (cur-rently i g-nored), @texttt \VignetteDepends[] Underfull \hbox (badness 2617) in paragraph at lines 3504--3512 @textrm pack-age in-stal-la-tion time to cre-ate the saved data frame `@texttt Meta/vignette.rds[]@textrm '[], but Underfull \hbox (badness 3579) in paragraph at lines 3504--3512 @textrm The @texttt \VignetteEngine[] @textrm state-ment is de-scribed in [][]$ @textsy h$@textrm un-de-fined$@textsy i$ @textrm [Non-Sweave vi-gnettes], [40] [41] [42] [43] [44] [45] [46}]] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.toc [47] [-1 [48]) [-2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.toc]) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.toc) (Acknowledgements) Underfull \hbox (badness 10000) in paragraph at lines 4342--4362 @textrm at [][]@texttt http://pubs.opengroup.org/onlinepubs/9699919799/utiliti es/make.html[][][]@textrm ; [49] Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL[][]| Chapter 1 [1 [50]] [51 [2]] [52 [3]] [53 [4]] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4729--4729 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4731--4731 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4732--4732 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Underfull \hbox (badness 3826) in paragraph at lines 4735--4742 @textrm Java 9 changed the for-mat of this string (which used to be some-thing like Overfull \hbox (55.2397pt too wide) in paragraph at lines 4747--4747 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [54 Chapter 2 [5]] [55 [6]] [7 [56]] [57 [8]] [58 [9]] Underfull \hbox (badness 3826) in paragraph at lines 5196--5199 []@textrm Some (but not all) ex-ten-sions are listed at [][]@texttt https://gc c.gnu.org/onlinedocs/ Underfull \hbox (badness 10000) in paragraph at lines 5196--5199 @texttt gcc/C-Extensions.html[][][] @textrm and [][]@texttt https://gcc.gnu.or g/onlinedocs/gcc/C_002b_ [59 [10]] Chapter 3 [11] [60] [61] [12 Overfull \hbox (32.24495pt too wide) in paragraph at lines 5401--5401 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [62] Underfull \hbox (badness 2088) in paragraph at lines 1104--1112 []@textrm Octave is a nu-mer-i-cal lin-ear al-ge-bra sys-tem ([][]@texttt http: //www.octave.org[][][]@textrm ), and func-tion Chapter 4] [13] [63] Underfull \hbox (badness 3058) in paragraph at lines 1196--1202 @textrm data-bases and even text files (pos-si-bly com-pressed). Open Data-base Con-nec-tiv-ity [14] [64] [15] [65] Underfull \hbox (badness 10000) in paragraph at lines 1355--1359 []@textrm Package [][]@textbf RMongo[][] @textrm pro-vides an R in-ter-face to a Java client for `Mon-goDB' Underfull \hbox (badness 10000) in paragraph at lines 1355--1359 @textrm ([][]@texttt https://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data- bases, which are queried us-ing [16 [66]] Chapter 2 [67] Underfull \hbox (badness 3690) in paragraph at lines 1417--1421 []@textrm These are con-ve-nient in-ter-faces to read/write/test/delete ta-bles in the data-base. [17 [68]] [69 [18]] Chapter 5 [19 [70]] [71] Underfull \hbox (badness 3098) in paragraph at lines 1755--1761 @textrm to @reducedrm NASA@textrm 's HDF5 (Hi-er-ar-chi-cal Data For-mat, see [ ][]@texttt https://www.hdfgroup.org/HDF5/[][][]@textrm ) Underfull \hbox (badness 10000) in paragraph at lines 1755--1761 @textrm and to UCAR's netCDF data files (net-work Com-mon Data Form, see Underfull \hbox (badness 2111) in paragraph at lines 1781--1794 @textrm been adopted for the 'Xbase' fam-ily of data-bases, cov-er-ing dBase, C lip-per, Fox-Pro Underfull \hbox (badness 3098) in paragraph at lines 1781--1794 @textrm (see for ex-am-ple [][]@texttt http://www.digitalpreservation.gov/forma ts/fdd/fdd000325.shtml[][][] Chapter 6 [20] [72] Chapter 7 [21 [73]] [74 [22]] Underfull \hbox (badness 2707) in paragraph at lines 6526--6532 []@textrm Packages may have an over-view help page with an @texttt \alias[] @te xtttsl pkg-name@texttt -package[]@textrm , e.g. Underfull \hbox (badness 3635) in paragraph at lines 6533--6539 []@textrm Skeletons of doc-u-men-ta-tion for a pack-age can be gen-er-ated us-i ng the func-tion [75 [23]] Underfull \hbox (badness 2150) in paragraph at lines 2094--2098 []@textrm A sum-mary of all the con-nec-tions cur-rently opened by the user can be found by [24 [76]] Chapter 8 [25] [77 Underfull \hbox (badness 3815) in paragraph at lines 2239--2241 []@textrm The ear-lier low-level in-ter-face is given by func-tions @texttt mak e.socket[]@textrm , @texttt read.socket[]@textrm , Chapter 9 [26]] [78 Underfull \hbox (badness 2012) in paragraph at lines 2278--2287 []@textrm If you do not have Ex-cel, many other pro-grams are able to read such spread- Underfull \hbox (badness 7326) in paragraph at lines 2278--2287 @textrm sheets and ex-port in a text for-mat on both Win-dows and Unix, for ex- am- Underfull \hbox (badness 10000) in paragraph at lines 2278--2287 @textrm ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[][][ ]@textrm ) and OpenOf-fice Appendix A [27]] Overfull \hbox (38.37012pt too wide) in paragraph at lines 2363--2366 @textrm B. D. Rip-ley (2001) Con-nec-tions. @textit R News@textrm , @textbf 1/1 @textrm , 16--7. [][]@texttt https://www.r-project.org/doc/Rnews/Rnews_ (Function and variable index) [28 Underfull \hbox (badness 10000) in paragraph at lines 6923--6930 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and Underfull \hbox (badness 3919) in paragraph at lines 6923--6930 @texttt \figure{@textttsl filename@texttt }{@textttsl alternate text@texttt }[] @textrm . This will in-clude a copy of the fig-ure in [79] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.vrs] [80] [29 Underfull \hbox (badness 10000) in paragraph at lines 7100--7106 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text @textrm part of [81]]) (Concept index) [30 [82]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.cps Underfull \hbox (badness 10000) in paragraph at lines 7242--7246 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file Underfull \hbox (badness 4686) in paragraph at lines 7242--7246 @textrm `@texttt share/Rd/macros/system.Rd[]@textrm '[] of the R source or home di-rec-tory, and these will [83]) [31 [84] Overfull \hbox (3.59178pt too wide) in paragraph at lines 7412--7415 []@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http ://www.walware.de/goto/statet[][][]@textrm ), Underfull \hbox (badness 3029) in paragraph at lines 7419--7421 []@textrm Some R front-ends pro-vide edit-ing sup-port for `@texttt .Rd[]@textr m '[] files, for ex-am-ple RStu-dio Chapter 3 [85]] ) (see the transcript file for additional information)]]] Overfull \hbox (213.15503pt too wide) in paragraph at lines 8013--8018 [][]@texttt https://developer.apple.com/library/content/documentation/Developer Tools/Conceptual/InstrumentsUserGuide/index.html[][][]@textrm ). Chapter 4]] Underfull \hbox (badness 10000) in paragraph at lines 8395--8404 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [98] Output written on R-data.pdf (35 pages, 303197 bytes). Transcript written on R-data.log. [99] [100] Underfull \hbox (badness 10000) in paragraph at lines 8619--8625 []@texttt valgrind[] @textrm is good at spot-ting the use of unini-tial-ized va l-ues: use op-tion Underfull \hbox (badness 10000) in paragraph at lines 8658--8668 @textrm See [][]@texttt https://clang.llvm.org/docs/UsersManual.html#controllin g-code-generation[][][]@textrm , Underfull \hbox (badness 2478) in paragraph at lines 8658--8668 [][]@texttt https://clang.llvm.org/docs/AddressSanitizer.html[][][] @textrm and [][]@texttt https://code.google.com/ Overfull \hbox (39.30319pt too wide) in paragraph at lines 8672--8673 [][][]@smallrm see [][]@smalltt http://llvm.org/devmtg/2014-04/PDFs/LightningTa lks/EuroLLVM%202014%20--%20container%20overflow.pdf[][][]@smallrm .| [101] Underfull \hbox (badness 4913) in paragraph at lines 8701--8704 [][][]@smallrm installed on some Linux sys-tems as @smalltt asan_symbolize[]@sm allrm , and ob-tain-able from [][]@smalltt https://llvm.org/ Underfull \hbox (badness 10000) in paragraph at lines 8701--8704 @smalltt svn/llvm-project/compiler-rt/trunk/lib/asan/scripts/asan_symbolize.py[ ][][]@smallrm : it makes use of Underfull \hbox (badness 10000) in paragraph at lines 8740--8745 []@textrm For op-tions avail-able @textit via @textrm the en-vi-ron-ment vari-a ble @texttt ASAN_OPTIONS[] @textrm see Underfull \hbox (badness 10000) in paragraph at lines 8740--8745 [][]@texttt https://code.google.com/p/address-sanitizer/wiki/AddressSanitizerFL ags[][][]@textrm . Underfull \hbox (badness 10000) in paragraph at lines 8756--8760 []@textrm Recent ver-sions$[]$ added the flag `@texttt -fsanitize-address-use-a fter-scope[]@textrm '[]: see [102] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8804--8804 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8832--8834 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by Overfull \hbox (42.79823pt too wide) in paragraph at lines 8837--8840 []@textrm For @texttt clang[] @textrm see [][]@texttt https://clang.llvm.org/do cs/UndefinedBehaviorSanitizer.html#ubsan-checks[][][]@textrm . Underfull \hbox (badness 2027) in paragraph at lines 8886--8893 @textrm where @texttt float-divide-by-zero[] @textrm is not de-sir-able for R u ses and @texttt bounds-strict[] @textrm is an Underfull \hbox (badness 2384) in paragraph at lines 8886--8893 @textrm part of `@texttt -fsanitize=undefined[]@textrm '[], but can be spec-i-f ied sep-a-rately. It adds op-tions [103] Underfull \hbox (badness 5878) in paragraph at lines 8921--8925 []@textrm For more de-tails on the topic see [][]@texttt http://blog.regehr.org /archives/213[][][] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 8935--8942 []@textrm Recent ver-sions of @texttt clang[] @textrm on `@texttt x86_64[]@text rm '[] Linux have `Thread-San-i-tizer' Underfull \hbox (badness 4441) in paragraph at lines 8935--8942 @textrm ([][]@texttt https://code.google.com/p/thread-sanitizer/[][][]@textrm ) , a `data race de-tec-tor for C/C@texttt ++ Overfull \hbox (50.80455pt too wide) in paragraph at lines 8964--8964 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [104] [105] [106] [107] Chapter 5 [108] [109] [110]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. [111] [112entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.t2d/pdf/xtr/R-data.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]:] pdf, fonts, [113] page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, [114 macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> )] localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.aux Underfull \hbox (badness 4505) in paragraph at lines 9865--9870 @textrm Without or with reg-is-tra-tion, these will both work. If @texttt R_ini t_mypkg[] @textrm calls @texttt R_ [115]) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [116) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map] [117] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10111--10111 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [118] [119] [120}]] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.toc [121] [-1 [122]]) [-2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.toc) (Acknowledgements) Overfull \hbox (61.1125pt too wide) in paragraph at lines 10552--10554 [][][]@smallrm For ex-am-ple, `@smalltt _GLIBCXX_USE_CXX11_ABI[]@smallrm '[] in @smalltt g++[] @smallrm 5.1 and later: [][]@smalltt https://gcc.gnu.org/online docs/libstdc++/manual/using_ [123 Overfull \hbox (8.53186pt too wide) in paragraph at lines 88--88 [][]@textbf dataframes2xls[][]| Overfull \hbox (2.70708pt too wide) in paragraph at lines 98--98 [][]@textbf RPostgreSQL[][]| Chapter 1 [1]] [2] [3 Overfull \hbox (16.31242pt too wide) in paragraph at lines 10691--10691 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [124]] [4] Chapter 2 [5 [125]] [6] [7 [126]] [8 [127] [9]] [10] Chapter 3 [11] [128] [12 [129] Underfull \hbox (badness 2088) in paragraph at lines 1104--1112 []@textrm Octave is a nu-mer-i-cal lin-ear al-ge-bra sys-tem ([][]@texttt http: //www.octave.org[][][]@textrm ), and func-tion Chapter 4 [13]] [130] Underfull \hbox (badness 3058) in paragraph at lines 1196--1202 @textrm data-bases and even text files (pos-si-bly com-pressed). Open Data-base Con-nec-tiv-ity [14] [15 [131]] [132 Underfull \hbox (badness 10000) in paragraph at lines 1355--1359 []@textrm Package [][]@textbf RMongo[][] @textrm pro-vides an R in-ter-face to a Java client for `Mon-goDB' Underfull \hbox (badness 10000) in paragraph at lines 1355--1359 @textrm ([][]@texttt https://en.wikipedia.org/wiki/MongoDB[][][]@textrm ) data- bases, which are queried us-ing [16]] Underfull \hbox (badness 2781) in paragraph at lines 11452--11454 [][][]@smallrm You can as-sign a @smallit copy @smallrm of the ob-ject in the e n-vi-ron-ment frame @smalltt rho[] @smallrm us-ing @smalltt defineVar(symbol, [133 Underfull \hbox (badness 3690) in paragraph at lines 1417--1421 []@textrm These are con-ve-nient in-ter-faces to read/write/test/delete ta-bles in the data-base. [17]] [18 Underfull \hbox (badness 10000) in paragraph at lines 11534--11536 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [134] Chapter 5] [19] [135] Underfull \hbox (badness 3098) in paragraph at lines 1755--1761 @textrm to @reducedrm NASA@textrm 's HDF5 (Hi-er-ar-chi-cal Data For-mat, see [ ][]@texttt https://www.hdfgroup.org/HDF5/[][][]@textrm ) Underfull \hbox (badness 10000) in paragraph at lines 1755--1761 @textrm and to UCAR's netCDF data files (net-work Com-mon Data Form, see Underfull \hbox (badness 2111) in paragraph at lines 1781--1794 @textrm been adopted for the 'Xbase' fam-ily of data-bases, cov-er-ing dBase, C lip-per, Fox-Pro Underfull \hbox (badness 3098) in paragraph at lines 1781--1794 @textrm (see for ex-am-ple [][]@texttt http://www.digitalpreservation.gov/forma ts/fdd/fdd000325.shtml[][][] Chapter 6 [20] [136] Chapter 7 [21] [137] [22 [138]] [139 [23]] [140] Underfull \hbox (badness 2150) in paragraph at lines 2094--2098 []@textrm A sum-mary of all the con-nec-tions cur-rently opened by the user can be found by [24] [141] Chapter 8 [25 [142]] Underfull \hbox (badness 3815) in paragraph at lines 2239--2241 []@textrm The ear-lier low-level in-ter-face is given by func-tions @texttt mak e.socket[]@textrm , @texttt read.socket[]@textrm , Chapter 9 [26] [143] Underfull \hbox (badness 2012) in paragraph at lines 2278--2287 []@textrm If you do not have Ex-cel, many other pro-grams are able to read such spread- Underfull \hbox (badness 7326) in paragraph at lines 2278--2287 @textrm sheets and ex-port in a text for-mat on both Win-dows and Unix, for ex- am- Underfull \hbox (badness 10000) in paragraph at lines 2278--2287 @textrm ple Gnu-meric ([][]@texttt http://www.gnome.org/projects/gnumeric/[][][ ]@textrm ) and OpenOf-fice Appendix A [144 [27]] Overfull \hbox (38.37012pt too wide) in paragraph at lines 2363--2366 @textrm B. D. Rip-ley (2001) Con-nec-tions. @textit R News@textrm , @textbf 1/1 @textrm , 16--7. [][]@texttt https://www.r-project.org/doc/Rnews/Rnews_ (Function and variable index) [28] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.vrs [145] [146 [29] Underfull \hbox (badness 10000) in paragraph at lines 12547--12552 []@textrm A toy ex-am-ple of the use of weak ref-er-ences can be found at Underfull \hbox (badness 10000) in paragraph at lines 12547--12552 [][]@texttt https://homepage.stat.uiowa.edu/~luke/R/references/weakfinex.html[] [][]@textrm , but Overfull \hbox (22.06111pt too wide) in paragraph at lines 12572--12572 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [147]]) (Concept index) [30] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-data.cps [148)] Chapter 6 [31 [149] [150]] ) (see the transcript file for additional information) [151 [152] [155] Output written on R-data.pdf (35 pages, 303195 bytes). Transcript written on R-data.log. [156] [157]. [158] [159] [160] [161] Warning: unbalanced parentheses in @def... [162] [163] [164] [165] Underfull \hbox (badness 2689) in paragraph at lines 14255--14261 []@textrm The vis-i-bil-ity mech-a-nism is not avail-able on Win-dows, but ther e is an equally [166] [167] Underfull \hbox (badness 10000) in paragraph at lines 14383--14389 []@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi csEngine.h[]@textrm '[], Underfull \hbox (badness 3240) in paragraph at lines 14383--14389 @textrm `@texttt R_ext/GraphicsDevice.h[]@textrm '[] (which it in-cludes) and ` @texttt R_ext/QuartzDevice.h[]@textrm '[]. Fa-cil-i- Chapter 7 [168] [169] Chapter 8 [170] [171] [172] Overfull \hbox (22.06111pt too wide) in paragraph at lines 14795--14795 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [173] Overfull \hbox (33.55849pt too wide) in paragraph at lines 14854--14854 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [174] [175] [176]make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' Underfull \hbox (badness 10000) in paragraph at lines 15097--15104 @texttt internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet/nanohtt p.c[]@textrm '[] and `@texttt src/modules/ [177] Underfull \hbox (badness 10000) in paragraph at lines 15221--15226 []@textrm Another (D)COM server, @texttt RDCOMServer[]@textrm , may be avail-a ble from Omega-hat, [178] [179] Underfull \hbox (badness 6284) in paragraph at lines 15357--15364 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H KEY_LOCAL_ Underfull \hbox (badness 10000) in paragraph at lines 15357--15364 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and Underfull \hbox (badness 3769) in paragraph at lines 15357--15364 @texttt HKEY_CURRENT_USER\Software\R-core\R\InstallPath[] @textrm oth-er-wise, if se-lected dur-ing [180] [181] (Function and variable index) [182make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' ] (Concept index) [183] [184] ) (see the transcript file for additional information) Output written on R-exts.pdf (187 pages, 933228 bytes). Transcript written on R-exts.log. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.aux) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map.}] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.toc [-1] [-2] [-3]) [-4] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] Underfull \hbox (badness 4660) in paragraph at lines 280--283 []@textrm For the con-ven-tions for files `@texttt NEWS[]@textrm '[] and `@text tt ChangeLog[]@textrm '[] in the @reducedrm GNU @textrm project see [3] Underfull \hbox (badness 10000) in paragraph at lines 370--380 [][]@texttt https://www.debian.org/doc/debian-policy/index.html#document-ch-con trolfields[][][]@textrm : [4] [5] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6] Underfull \hbox (badness 10000) in paragraph at lines 631--644 @textrm Lit-er-a-ture Clas-si-fi-ca-tion Sys-tem, [][]@texttt https://www.aeawe b.org/econlit/jelCodes.php[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 631--644 @textrm or `@texttt Classification/MSC[]@textrm '[] or `@texttt Classification/ MSC-2010[]@textrm '[] (the Math-e-mat-ics Sub-ject [7] [8] [9] [10] Underfull \hbox (badness 2376) in paragraph at lines 1014--1021 @textrm this is OK if that con-di-tion-ing is done in ex-am-ples/tests/vignette s, al-though us-ing [11] [12] [13] [14] [15] [16] Underfull \hbox (badness 10000) in paragraph at lines 1459--1466 @textrm `@texttt RnavGraph/inst/tcl[]@textrm '[], `@texttt RProtoBuf/inst/pytho n[]@textrm '[] and `@texttt emdbook/inst/BUGS[]@textrm '[] and Underfull \hbox (badness 5288) in paragraph at lines 1496--1500 @textrm then down-load the sources from [][]@texttt https://sourceforge.net/pro jects/tcllib/files/ [17] [18] [19] [20] [21] Underfull \hbox (badness 10000) in paragraph at lines 1921--1926 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines which Underfull \hbox (badness 2875) in paragraph at lines 1921--1926 @textrm were cur-rent in 2003: a list of which rou-tines are in-cluded is in f ile [22] [23] Underfull \hbox (badness 10000) in paragraph at lines 2121--2123 [][][][][]@smalltt http://www.openmp.org/[][][]@smallrm , [][]@smalltt https:// en.wikipedia.org/wiki/OpenMP[][][]@smallrm , [][]@smalltt https://computing.lln l.gov/ [24] [25] Overfull \hbox (46.15797pt too wide) in paragraph at lines 2335--2335 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2337--2337 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26] [27] [28] Underfull \hbox (badness 10000) in paragraph at lines 2586--2588 [][][]@smallrm The changes are linked from [][]@smalltt https://isocpp.org/std/ standing-documents/ [29] [30] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2719--2719 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [31] Underfull \hbox (badness 10000) in paragraph at lines 2767--2773 [][][]@smallrm See [][]@smalltt https://isocpp.org/std/standing-documents/sd-6- sg10-feature-test-recommendations[][][] @smallrm or [32] [33] [34] [35] [36] Underfull \hbox (badness 2809) in paragraph at lines 3267--3273 @textrm (or set the en-vi-ron-ment vari-able @texttt _R_BUILD_KEEP_EMPTY_DIRS_[ ] @textrm to `@texttt TRUE[]@textrm '[], or have a [37] [38] [39] Underfull \hbox (badness 4556) in paragraph at lines 3504--3512 @textrm Others you may see are @texttt \VignettePackage[] @textrm (cur-rently i g-nored), @texttt \VignetteDepends[] [40] [41This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. ] [42]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, [43] [44 page headings,] tables, conditionals, indexing, sectioning, [45 toc, environments, defuns,] macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, [46] formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [47) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map] [48] Underfull \hbox (badness 10000) in paragraph at lines 4342--4362 @textrm at [][]@texttt http://pubs.opengroup.org/onlinepubs/9699919799/utiliti es/make.html[][][]@textrm ; [49] [50] [51] [52] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4729--4729 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4731--4731 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4732--4732 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Underfull \hbox (badness 3826) in paragraph at lines 4735--4742 @textrm Java 9 changed the for-mat of this string (which used to be some-thing like Overfull \hbox (55.2397pt too wide) in paragraph at lines 4747--4747 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [53}]] [2] [-1] Chapter 1 [54] [1 [55]] [2 [56]] [3 [57]] [4 [58]] [5] Underfull \hbox (badness 3826) in paragraph at lines 5196--5199 []@textrm Some (but not all) ex-ten-sions are listed at [][]@texttt https://gc c.gnu.org/onlinedocs/ Underfull \hbox (badness 10000) in paragraph at lines 5196--5199 @texttt gcc/C-Extensions.html[][][] @textrm and [][]@texttt https://gcc.gnu.or g/onlinedocs/gcc/C_002b_ [59 [6]] [60 [7]] Overfull \hbox (32.24495pt too wide) in paragraph at lines 5401--5401 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [61 [8]] [9 [62]] [10 [63]] [64 [11]] [65 [12]] [13 Chapter 2 [66]] [14 [67]] [68 [15]] [69] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16] [70] [17 [71]] [72 [18]] [73] [19] Underfull \hbox (badness 2707) in paragraph at lines 6526--6532 []@textrm Packages may have an over-view help page with an @texttt \alias[] @te xtttsl pkg-name@texttt -package[]@textrm , e.g. Underfull \hbox (badness 3635) in paragraph at lines 6533--6539 []@textrm Skeletons of doc-u-men-ta-tion for a pack-age can be gen-er-ated us-i ng the func-tion [74] [20] [75 [21]] Chapter 2 [22] [23 [76]] [24] [25 [77]] Underfull \hbox (badness 3108) in paragraph at lines 2324--2329 []@textrm Some prim-i-tives are re-garded as lan-guage el-e-ments (the cur-rent ones are listed [26 Underfull \hbox (badness 10000) in paragraph at lines 6923--6930 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and Underfull \hbox (badness 3919) in paragraph at lines 6923--6930 @texttt \figure{@textttsl filename@texttt }{@textttsl alternate text@texttt }[] @textrm . This will in-clude a copy of the fig-ure in [78] Chapter 3 [27]] [28 [79] Chapter 4 [29]] [30 Underfull \hbox (badness 10000) in paragraph at lines 7100--7106 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text @textrm part of [80] Chapter 5 [31]] Chapter 6 [32 [81]] Underfull \hbox (badness 10000) in paragraph at lines 2719--2722 @texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt https://www.stat.a uckland.ac.nz/~paul/R/ [33 Underfull \hbox (badness 10000) in paragraph at lines 7242--7246 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file Underfull \hbox (badness 4686) in paragraph at lines 7242--7246 @textrm `@texttt share/Rd/macros/system.Rd[]@textrm '[] of the R source or home di-rec-tory, and these will [82]] [34] [83 [35]] Overfull \hbox (3.59178pt too wide) in paragraph at lines 7412--7415 []@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http ://www.walware.de/goto/statet[][][]@textrm ), Underfull \hbox (badness 3029) in paragraph at lines 7419--7421 []@textrm Some R front-ends pro-vide edit-ing sup-port for `@texttt .Rd[]@textr m '[] files, for ex-am-ple RStu-dio Chapter 3 [84] [36] [37 [85]] [86 Underfull \hbox (badness 4467) in paragraph at lines 3216--3220 []@textrm The in-ter-pre-ta-tion of the line tex-ture (@texttt par("lty"[]@text rm ) is de-scribed in the header [38]] [39 [87]] [40 Underfull \hbox (badness 2443) in paragraph at lines 7770--7773 []@textrm Data frames are slower than ma-tri-ces and this is an ex-am-ple of wh y. Us-ing Underfull \hbox (badness 10000) in paragraph at lines 7793--7798 []@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject, and @texttt oprofile[] @textrm (see Underfull \hbox (badness 4927) in paragraph at lines 7793--7798 [][]@texttt http://oprofile.sourceforge.net/[][][]@textrm ) and @texttt perf[] @textrm (see [][]@texttt https://perf.wiki.kernel.org/ [88]] [89] [41 [90]] [91] Overfull \hbox (213.15503pt too wide) in paragraph at lines 8013--8018 [][]@texttt https://developer.apple.com/library/content/documentation/Developer Tools/Conceptual/InstrumentsUserGuide/index.html[][][]@textrm ). Chapter 4 Underfull \hbox (badness 6428) in paragraph at lines 3519--3523 []@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te xtrm struc-ture de-fined in [42 [92]] [93 Chapter 7 [43]] [94] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 []@texttt R.app[] @textrm re-lies on `@texttt libR.dylib[]@textrm '[] be-ing in a spe-cific place, and hence on Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm R hav-ing been built and in-stalled as a Mac macOS `frame-work'. Specif - Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm i-cally, it uses `@texttt /Library/Frameworks/R.framework/R[]@textrm '[ ]. This is a sym-bolic Underfull \hbox (badness 3679) in paragraph at lines 3631--3640 @textrm link, as frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu -ally re-solves to Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm `@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib /libR.dylib[]@textrm '[], [44 [95]] Chapter 8 [45] [96] [46 Underfull \hbox (badness 10000) in paragraph at lines 8395--8404 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [97]] [98 Underfull \hbox (badness 2326) in paragraph at lines 3852--3857 []@textrm Allows turn-ing off @texttt checkFF()[] @textrm test-ing. If set to `@texttt registration[]@textrm '[], checks Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47]] Underfull \hbox (badness 10000) in paragraph at lines 8619--8625 []@texttt valgrind[] @textrm is good at spot-ting the use of unini-tial-ized va l-ues: use op-tion [99 [48]] Underfull \hbox (badness 10000) in paragraph at lines 8658--8668 @textrm See [][]@texttt https://clang.llvm.org/docs/UsersManual.html#controllin g-code-generation[][][]@textrm , Underfull \hbox (badness 2478) in paragraph at lines 8658--8668 [][]@texttt https://clang.llvm.org/docs/AddressSanitizer.html[][][] @textrm and [][]@texttt https://code.google.com/ Overfull \hbox (39.30319pt too wide) in paragraph at lines 8672--8673 [][][]@smallrm see [][]@smalltt http://llvm.org/devmtg/2014-04/PDFs/LightningTa lks/EuroLLVM%202014%20--%20container%20overflow.pdf[][][]@smallrm .| Underfull \hbox (badness 4913) in paragraph at lines 8701--8704 [][][]@smallrm installed on some Linux sys-tems as @smalltt asan_symbolize[]@sm allrm , and ob-tain-able from [][]@smalltt https://llvm.org/ Underfull \hbox (badness 10000) in paragraph at lines 8701--8704 @smalltt svn/llvm-project/compiler-rt/trunk/lib/asan/scripts/asan_symbolize.py[ ][][]@smallrm : it makes use of [100 [49]] Underfull \hbox (badness 10000) in paragraph at lines 8740--8745 []@textrm For op-tions avail-able @textit via @textrm the en-vi-ron-ment vari-a ble @texttt ASAN_OPTIONS[] @textrm see Underfull \hbox (badness 10000) in paragraph at lines 8740--8745 [][]@texttt https://code.google.com/p/address-sanitizer/wiki/AddressSanitizerFL ags[][][]@textrm . Underfull \hbox (badness 10000) in paragraph at lines 8756--8760 []@textrm Recent ver-sions$[]$ added the flag `@texttt -fsanitize-address-use-a fter-scope[]@textrm '[]: see [101 [50]] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8804--8804 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8832--8834 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by Overfull \hbox (42.79823pt too wide) in paragraph at lines 8837--8840 []@textrm For @texttt clang[] @textrm see [][]@texttt https://clang.llvm.org/do cs/UndefinedBehaviorSanitizer.html#ubsan-checks[][][]@textrm . Underfull \hbox (badness 2027) in paragraph at lines 8886--8893 @textrm where @texttt float-divide-by-zero[] @textrm is not de-sir-able for R u ses and @texttt bounds-strict[] @textrm is an Underfull \hbox (badness 2384) in paragraph at lines 8886--8893 @textrm part of `@texttt -fsanitize=undefined[]@textrm '[], but can be spec-i-f ied sep-a-rately. It adds op-tions [102] [51] Underfull \hbox (badness 5878) in paragraph at lines 8921--8925 []@textrm For more de-tails on the topic see [][]@texttt http://blog.regehr.org /archives/213[][][] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 8935--8942 []@textrm Recent ver-sions of @texttt clang[] @textrm on `@texttt x86_64[]@text rm '[] Linux have `Thread-San-i-tizer' Underfull \hbox (badness 4441) in paragraph at lines 8935--8942 @textrm ([][]@texttt https://code.google.com/p/thread-sanitizer/[][][]@textrm ) , a `data race de-tec-tor for C/C@texttt ++ Overfull \hbox (50.80455pt too wide) in paragraph at lines 8964--8964 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [103 [52]] [104] Underfull \hbox (badness 7326) in paragraph at lines 4254--4260 []@textrm Optionally check if ei-ther ar-gu-ment of the bi-nary op-er-a-tors @ texttt &&[] @textrm and Underfull \hbox (badness 6032) in paragraph at lines 4254--4260 @texttt ||[] @textrm has length greater than one. The for-mat is the same as f or Underfull \hbox (badness 5119) in paragraph at lines 4254--4260 []@textrm R[]CHECK[]LENGTH[]1[]CONDITION[]. De-fault: un-set (noth-ing is re- [53 [105]] [106 [54]] Chapter 9 Chapter 5 [55 [107]] [56 [108] Chapter 10 [57]] Chapter 11 [58] [109 Chapter 12 [59]]. [60 [110]] (Function and variable index) [61 [111] (Concept index) [62]] [63] ) (see the transcript file for additional information) [113 [115 [118] Output written on R-ints.pdf (66 pages, 360527 bytes). Transcript written on R-ints.log. [119] [120] [121] Overfull \hbox (61.1125pt too wide) in paragraph at lines 10552--10554 [][][]@smallrm For ex-am-ple, `@smalltt _GLIBCXX_USE_CXX11_ABI[]@smallrm '[] in @smalltt g++[] @smallrm 5.1 and later: [][]@smalltt https://gcc.gnu.org/online docs/libstdc++/manual/using_ [122] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10691--10691 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2781) in paragraph at lines 11452--11454 [][][]@smallrm You can as-sign a @smallit copy @smallrm of the ob-ject in the e n-vi-ron-ment frame @smalltt rho[] @smallrm us-ing @smalltt defineVar(symbol, [132]This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. Underfull \hbox (badness 10000) in paragraph at lines 11534--11536 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [133]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: [134] pdf, fonts, [135] [136] page headings, [137 tables, conditionals, indexing,] sectioning, [138 toc,] environments, defuns, macros, [139 cross references, insertions,] (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, [140] formatting, and turning on texinfo input format. [141) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.aux] [142] [143]) [144 (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)] [145]) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map Underfull \hbox (badness 10000) in paragraph at lines 12547--12552 []@textrm A toy ex-am-ple of the use of weak ref-er-ences can be found at Underfull \hbox (badness 10000) in paragraph at lines 12547--12552 [][]@texttt https://homepage.stat.uiowa.edu/~luke/R/references/weakfinex.html[] [][]@textrm , but Overfull \hbox (22.06111pt too wide) in paragraph at lines 12572--12572 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [146] [147] Chapter 6 [148] [149] [150] [151] [152] [153] [154}] [2]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.toc [-1 [155]]) [-2 [156] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.toc]) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.toc) Chapter 1 [1] [157] [2 [158]] [3 [159]] [4] [160] [5] Warning: unbalanced parentheses in @def... [161 [6]] [7 [162]] [8] [163] [9] [164] [10 Underfull \hbox (badness 2689) in paragraph at lines 14255--14261 []@textrm The vis-i-bil-ity mech-a-nism is not avail-able on Win-dows, but ther e is an equally [165]] [11 [166]] Underfull \hbox (badness 10000) in paragraph at lines 14383--14389 []@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi csEngine.h[]@textrm '[], Underfull \hbox (badness 3240) in paragraph at lines 14383--14389 @textrm `@texttt R_ext/GraphicsDevice.h[]@textrm '[] (which it in-cludes) and ` @texttt R_ext/QuartzDevice.h[]@textrm '[]. Fa-cil-i- Chapter 7 [167] [12 [168]] [13 Chapter 8 [169]] [14 [170]] [171] [15 Overfull \hbox (22.06111pt too wide) in paragraph at lines 14795--14795 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [172]] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16 Overfull \hbox (33.55849pt too wide) in paragraph at lines 14854--14854 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [173]] [174 [17]] [175] [18 Underfull \hbox (badness 10000) in paragraph at lines 15097--15104 @texttt internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet/nanohtt p.c[]@textrm '[] and `@texttt src/modules/ [176]] [19 Underfull \hbox (badness 10000) in paragraph at lines 15221--15226 []@textrm Another (D)COM server, @texttt RDCOMServer[]@textrm , may be avail-a ble from Omega-hat, [177]] [178 [20] Underfull \hbox (badness 6284) in paragraph at lines 15357--15364 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H KEY_LOCAL_ Underfull \hbox (badness 10000) in paragraph at lines 15357--15364 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and Underfull \hbox (badness 3769) in paragraph at lines 15357--15364 @texttt HKEY_CURRENT_USER\Software\R-core\R\InstallPath[] @textrm oth-er-wise, if se-lected dur-ing [179]] [21 [180]] Chapter 2 [22] (Function and variable index) [181] [23 (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.vrs] [24] [25] [182 Underfull \hbox (badness 3108) in paragraph at lines 2324--2329 []@textrm Some prim-i-tives are re-garded as lan-guage el-e-ments (the cur-rent ones are listed [26] Chapter 3 [27] [28]] Chapter 4 [29] [30] Chapter 5 [31 [183] Chapter 6 [32] Underfull \hbox (badness 10000) in paragraph at lines 2719--2722 @texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt https://www.stat.a uckland.ac.nz/~paul/R/ [33]]. [34] [35)] (Concept index) [184 [36] [37]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.cps Underfull \hbox (badness 4467) in paragraph at lines 3216--3220 []@textrm The in-ter-pre-ta-tion of the line tex-ture (@texttt par("lty"[]@text rm ) is de-scribed in the header [38] [185 [39] [40]]) [186 [41]] ) (see the transcript file for additional information) Chapter 7 [43 Chapter 8 [46]] [48] [50] [51 Output written on R-exts.pdf (192 pages, 1109774 bytes). Transcript written on R-exts.log. ] [52] Underfull \hbox (badness 7326) in paragraph at lines 4254--4260 []@textrm Optionally check if ei-ther ar-gu-ment of the bi-nary op-er-a-tors @ texttt &&[] @textrm and Underfull \hbox (badness 6032) in paragraph at lines 4254--4260 @texttt ||[] @textrm has length greater than one. The for-mat is the same as f or Underfull \hbox (badness 5119) in paragraph at lines 4254--4260 []@textrm R[]CHECK[]LENGTH[]1[]CONDITION[]. De-fault: un-set (noth-ing is re- [53] [54] Chapter 9 [55] [56] Chapter 10 [57] Chapter 11 [58] Chapter 12 [59] [60] (Function and variable index) [61] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.vrs [62]) (Concept index) [63] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.cps) [64] ) (see the transcript file for additional information) Output written on R-ints.pdf (68 pages, 450162 bytes). Transcript written on R-ints.log. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.t2d/pdf/xtr/R-exts.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.aux) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.mapThis is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. }] [2]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.t2d/pdf/xtr/R-ints.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.toc pdf, fonts, [-1 page headings, tables, conditionals,] indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, [-2 formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.aux] [-3) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)]) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map) [-4] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.toc) (Acknowledgements) Chapter 1 [1] [2] Underfull \hbox (badness 4660) in paragraph at lines 280--283 []@textrm For the con-ven-tions for files `@texttt NEWS[]@textrm '[] and `@text tt ChangeLog[]@textrm '[] in the @reducedrm GNU @textrm project see [3] Underfull \hbox (badness 10000) in paragraph at lines 370--380 [][]@texttt https://www.debian.org/doc/debian-policy/index.html#document-ch-con trolfields[][][]@textrm : [4] [5}] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.toc] Underfull \hbox (badness 10000) in paragraph at lines 493--496 []@textrm The `@texttt Depends[]@textrm '[], `@texttt Imports[]@textrm '[], `@t exttt Suggests[]@textrm '[], `@texttt Enhances[]@textrm '[], `@texttt LinkingTo []@textrm '[] and [6 [-1]] Underfull \hbox (badness 10000) in paragraph at lines 631--644 @textrm Lit-er-a-ture Clas-si-fi-ca-tion Sys-tem, [][]@texttt https://www.aeawe b.org/econlit/jelCodes.php[][][]@textrm , Underfull \hbox (badness 10000) in paragraph at lines 631--644 @textrm or `@texttt Classification/MSC[]@textrm '[] or `@texttt Classification/ MSC-2010[]@textrm '[] (the Math-e-mat-ics Sub-ject [7]) [-2 [8] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.toc]) Chapter 1 [9] [1] [10 [2]] Underfull \hbox (badness 2376) in paragraph at lines 1014--1021 @textrm this is OK if that con-di-tion-ing is done in ex-am-ples/tests/vignette s, al-though us-ing [11 [3]] [4 [12]] [5] [13 [6]] [14 [7]] [15 [8]] [16 [9]] [10 Underfull \hbox (badness 10000) in paragraph at lines 1459--1466 @textrm `@texttt RnavGraph/inst/tcl[]@textrm '[], `@texttt RProtoBuf/inst/pytho n[]@textrm '[] and `@texttt emdbook/inst/BUGS[]@textrm '[] and Underfull \hbox (badness 5288) in paragraph at lines 1496--1500 @textrm then down-load the sources from [][]@texttt https://sourceforge.net/pro jects/tcllib/files/ [17]] [11 [18]] [19 [12]] [13 [20]] [14 [21]] Underfull \hbox (badness 10000) in paragraph at lines 1921--1926 []@textrm [@texttt libRlapack[] @textrm in-cludes all the double-precision LA- PACK rou-tines which Underfull \hbox (badness 2875) in paragraph at lines 1921--1926 @textrm were cur-rent in 2003: a list of which rou-tines are in-cluded is in f ile [22 [15]] [23] Overfull \hbox (27.8098pt too wide) in paragraph at lines 1455--1455 [] @texttt length(nM <- asNamespace("Matrix") ) # 941 for M atrix 1.2-6[] Overfull \hbox (56.55324pt too wide) in paragraph at lines 1456--1456 [] @texttt length(meth <- grep("^[.]__T__", names(nM), value=TRUE))# 107 gener ics with methods[] Overfull \hbox (45.05586pt too wide) in paragraph at lines 1457--1457 [] @texttt length(meth.Ops <- nM$`.__T__Ops:base`) # 71 methods for the 'Ops' (group)generic[] Overfull \hbox (137.03487pt too wide) in paragraph at lines 1458--1458 [] @texttt head(sort(names(meth.Ops))) ## "abIndex#abIndex" ... "ANY#ddiMatrix " "ANY#ldiMatrix" "ANY#Matrix"[] [16 Underfull \hbox (badness 10000) in paragraph at lines 2121--2123 [][][][][]@smalltt http://www.openmp.org/[][][]@smallrm , [][]@smalltt https:// en.wikipedia.org/wiki/OpenMP[][][]@smallrm , [][]@smalltt https://computing.lln l.gov/ [24]] [17 [25]] [18 Overfull \hbox (46.15797pt too wide) in paragraph at lines 2335--2335 []@smalltt SOURCES = $(wildcard data/*.cpp network/*.cpp utils/*.cpp model/*.c pp model/*/*.cpp model/*/*/*.cpp)[] Overfull \hbox (31.98314pt too wide) in paragraph at lines 2337--2337 []@smalltt OBJECTS = siena07utilities.o siena07internals.o siena07setup.o sien a07models.o $(SOURCES:.cpp=.o)[] [26]] [27] [19 [28]] Underfull \hbox (badness 10000) in paragraph at lines 2586--2588 [][][]@smallrm The changes are linked from [][]@smalltt https://isocpp.org/std/ standing-documents/ [29 [20]] [30 [21]] Overfull \hbox (39.30717pt too wide) in paragraph at lines 2719--2719 [] @texttt CXX="$(CXX11) $(CXX11STD)" CXXFLAGS="$(CXX11FLAGS) $(CXX 11PICFLAGS)")[] [31 Chapter 2 [22]] [23] Underfull \hbox (badness 10000) in paragraph at lines 2767--2773 [][][]@smallrm See [][]@smalltt https://isocpp.org/std/standing-documents/sd-6- sg10-feature-test-recommendations[][][] @smallrm or [32 [24]] [33 [25]] [34 Underfull \hbox (badness 3108) in paragraph at lines 2324--2329 []@textrm Some prim-i-tives are re-garded as lan-guage el-e-ments (the cur-rent ones are listed [26]] Chapter 3 [27] [35 [28]] Chapter 4 [29] [36 [30]] Chapter 5 [31 Underfull \hbox (badness 2809) in paragraph at lines 3267--3273 @textrm (or set the en-vi-ron-ment vari-able @texttt _R_BUILD_KEEP_EMPTY_DIRS_[ ] @textrm to `@texttt TRUE[]@textrm '[], or have a [37] Chapter 6 [32]] [38 Underfull \hbox (badness 10000) in paragraph at lines 2719--2722 @texttt ~paul/R/basegraph.html[][][] @textrm and [][]@texttt https://www.stat.a uckland.ac.nz/~paul/R/ [33]] [39 [34]] [35] Underfull \hbox (badness 4556) in paragraph at lines 3504--3512 @textrm Others you may see are @texttt \VignettePackage[] @textrm (cur-rently i g-nored), @texttt \VignetteDepends[] [40 [36]] [37 [41]] Underfull \hbox (badness 4467) in paragraph at lines 3216--3220 []@textrm The in-ter-pre-ta-tion of the line tex-ture (@texttt par("lty"[]@text rm ) is de-scribed in the header [38] [42 [39]] [43 [40]] [44 [41]] [45] Underfull \hbox (badness 6428) in paragraph at lines 3519--3523 []@textrm The base sys-tem state is con-tained in @texttt baseSystemState[] @te xtrm struc-ture de-fined in [42] [46 Chapter 7 [43]] Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 []@texttt R.app[] @textrm re-lies on `@texttt libR.dylib[]@textrm '[] be-ing in a spe-cific place, and hence on Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm R hav-ing been built and in-stalled as a Mac macOS `frame-work'. Specif - Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm i-cally, it uses `@texttt /Library/Frameworks/R.framework/R[]@textrm '[ ]. This is a sym-bolic Underfull \hbox (badness 3679) in paragraph at lines 3631--3640 @textrm link, as frame-works can con-tain mul-ti-ple ver-sions of R. It even-tu -ally re-solves to Underfull \hbox (badness 10000) in paragraph at lines 3631--3640 @textrm `@texttt /Library/Frameworks/R.framework/Versions/Current/Resources/lib /libR.dylib[]@textrm '[], [44 [47]] Chapter 8 [45] [48] [46] Underfull \hbox (badness 10000) in paragraph at lines 4342--4362 @textrm at [][]@texttt http://pubs.opengroup.org/onlinepubs/9699919799/utiliti es/make.html[][][]@textrm ; [49.] Underfull \hbox (badness 2326) in paragraph at lines 3852--3857 []@textrm Allows turn-ing off @texttt checkFF()[] @textrm test-ing. If set to `@texttt registration[]@textrm '[], checks Underfull \hbox (badness 10000) in paragraph at lines 3852--3857 @textrm the reg-is-tra-tion in-for-ma-tion (num-ber of ar-gu-ments, cor-rect c hoice of [47 [50]] [48] [51] [49] [52] [50] Overfull \hbox (32.24495pt too wide) in paragraph at lines 4729--4729 []@texttt jv <- .jcall("java/lang/System", "S", "getProperty", "java.runtime.v ersion")[] Overfull \hbox (26.49626pt too wide) in paragraph at lines 4731--4731 [] @texttt jvn <- as.numeric(paste0(strsplit(jv, "[.]")[[1L]][1:2], collapse = "."))[] Overfull \hbox (43.74232pt too wide) in paragraph at lines 4732--4732 [] @texttt if(jvn < 1.8) stop("Java >= 8 is needed for this package but not a vailable")[] Underfull \hbox (badness 3826) in paragraph at lines 4735--4742 @textrm Java 9 changed the for-mat of this string (which used to be some-thing like Overfull \hbox (55.2397pt too wide) in paragraph at lines 4747--4747 []@texttt java.lang.UnsupportedClassVersionError: ... Unsupported major.minor version 52.0[] [53] [51 [54]] [52 [55]] Underfull \hbox (badness 7326) in paragraph at lines 4254--4260 []@textrm Optionally check if ei-ther ar-gu-ment of the bi-nary op-er-a-tors @ texttt &&[] @textrm and Underfull \hbox (badness 6032) in paragraph at lines 4254--4260 @texttt ||[] @textrm has length greater than one. The for-mat is the same as f or Underfull \hbox (badness 5119) in paragraph at lines 4254--4260 []@textrm R[]CHECK[]LENGTH[]1[]CONDITION[]. De-fault: un-set (noth-ing is re- [53] [56] [54] Chapter 9 [55] [57] [56 [58] Chapter 10 [57]] Chapter 11 [58] Underfull \hbox (badness 3826) in paragraph at lines 5196--5199 []@textrm Some (but not all) ex-ten-sions are listed at [][]@texttt https://gc c.gnu.org/onlinedocs/ Underfull \hbox (badness 10000) in paragraph at lines 5196--5199 @texttt gcc/C-Extensions.html[][][] @textrm and [][]@texttt https://gcc.gnu.or g/onlinedocs/gcc/C_002b_ [59 Chapter 12 [59]] [60 [60]] (Function and variable index) [61 Overfull \hbox (32.24495pt too wide) in paragraph at lines 5401--5401 []@texttt 'register' storage class specifier is deprecated and incompatible wi th C++17[] [61] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.vrs] [62] [63] [64 [62] [65]] Chapter 2 [66)] (Concept index) [63 [67]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-ints.cps [68) [64] [69]] ) (see the transcript file for additional information)]]]] Output written on R-ints.pdf (68 pages, 450162 bytes). Transcript written on R-ints.log. [76] [77] Underfull \hbox (badness 10000) in paragraph at lines 6923--6930 []@textrm The two com-monly used sim-ple forms are @texttt \figure{@textttsl fi lename@texttt }[] @textrm and Underfull \hbox (badness 3919) in paragraph at lines 6923--6930 @texttt \figure{@textttsl filename@texttt }{@textttsl alternate text@texttt }[] @textrm . This will in-clude a copy of the fig-ure in [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 7100--7106 []@textrm The @texttt \out{@textttsl literal@texttt }[] @textrm macro would usu -ally be used within the @textsl text @textrm part of [80] [81] Underfull \hbox (badness 10000) in paragraph at lines 7242--7246 []@textrm As of R ver-sion 3.2.0, a num-ber of macros are de-fined in the file Underfull \hbox (badness 4686) in paragraph at lines 7242--7246 @textrm `@texttt share/Rd/macros/system.Rd[]@textrm '[] of the R source or home di-rec-tory, and these will [82] [83] Overfull \hbox (3.59178pt too wide) in paragraph at lines 7412--7415 []@textrm Another is the Eclipse IDE with the Stat-ET plu-gin ([][]@texttt http ://www.walware.de/goto/statet[][][]@textrm ), Underfull \hbox (badness 3029) in paragraph at lines 7419--7421 []@textrm Some R front-ends pro-vide edit-ing sup-port for `@texttt .Rd[]@textr m '[] files, for ex-am-ple RStu-dio Chapter 3 [84] [85] [86] [87] Underfull \hbox (badness 2443) in paragraph at lines 7770--7773 []@textrm Data frames are slower than ma-tri-ces and this is an ex-am-ple of wh y. Us-ing Underfull \hbox (badness 10000) in paragraph at lines 7793--7798 []@textrm Options in-clude us-ing @texttt sprof[] @textrm for a shared ob-ject, and @texttt oprofile[] @textrm (see Underfull \hbox (badness 4927) in paragraph at lines 7793--7798 [][]@texttt http://oprofile.sourceforge.net/[][][]@textrm ) and @texttt perf[] @textrm (see [][]@texttt https://perf.wiki.kernel.org/ [88] [89] [90] [91] Overfull \hbox (213.15503pt too wide) in paragraph at lines 8013--8018 [][]@texttt https://developer.apple.com/library/content/documentation/Developer Tools/Conceptual/InstrumentsUserGuide/index.html[][][]@textrm ). Chapter 4 [92] [93] [94] [95] [96] Underfull \hbox (badness 10000) in paragraph at lines 8395--8404 []@texttt debug[] @textrm can be used for hid-den func-tions and S3 meth-ods by e.g. [97] [98] Underfull \hbox (badness 10000) in paragraph at lines 8619--8625 []@texttt valgrind[] @textrm is good at spot-ting the use of unini-tial-ized va l-ues: use op-tion [99] Underfull \hbox (badness 10000) in paragraph at lines 8658--8668 @textrm See [][]@texttt https://clang.llvm.org/docs/UsersManual.html#controllin g-code-generation[][][]@textrm , Underfull \hbox (badness 2478) in paragraph at lines 8658--8668 [][]@texttt https://clang.llvm.org/docs/AddressSanitizer.html[][][] @textrm and [][]@texttt https://code.google.com/ Overfull \hbox (39.30319pt too wide) in paragraph at lines 8672--8673 [][][]@smallrm see [][]@smalltt http://llvm.org/devmtg/2014-04/PDFs/LightningTa lks/EuroLLVM%202014%20--%20container%20overflow.pdf[][][]@smallrm .| Underfull \hbox (badness 4913) in paragraph at lines 8701--8704 [][][]@smallrm installed on some Linux sys-tems as @smalltt asan_symbolize[]@sm allrm , and ob-tain-able from [][]@smalltt https://llvm.org/ Underfull \hbox (badness 10000) in paragraph at lines 8701--8704 @smalltt svn/llvm-project/compiler-rt/trunk/lib/asan/scripts/asan_symbolize.py[ ][][]@smallrm : it makes use of [100TEXINPUTS="../../.././doc/manual:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf ../../.././doc/manual/R-lang.texi ] Underfull \hbox (badness 10000) in paragraph at lines 8740--8745 []@textrm For op-tions avail-able @textit via @textrm the en-vi-ron-ment vari-a ble @texttt ASAN_OPTIONS[] @textrm see Underfull \hbox (badness 10000) in paragraph at lines 8740--8745 [][]@texttt https://code.google.com/p/address-sanitizer/wiki/AddressSanitizerFL ags[][][]@textrm . Underfull \hbox (badness 10000) in paragraph at lines 8756--8760 []@textrm Recent ver-sions$[]$ added the flag `@texttt -fsanitize-address-use-a fter-scope[]@textrm '[]: see [101] Overfull \hbox (56.55324pt too wide) in paragraph at lines 8804--8804 []@texttt setenv ASAN_OPTIONS 'alloc_dealloc_mismatch=0:detect_leaks=0:detect_ odr_violation=0'[] Underfull \hbox (badness 10000) in paragraph at lines 8832--8834 []@textrm This san-i-tizer can be com-bined with the Ad-dress San-i-tizer by Overfull \hbox (42.79823pt too wide) in paragraph at lines 8837--8840 []@textrm For @texttt clang[] @textrm see [][]@texttt https://clang.llvm.org/do cs/UndefinedBehaviorSanitizer.html#ubsan-checks[][][]@textrm . Underfull \hbox (badness 2027) in paragraph at lines 8886--8893 @textrm where @texttt float-divide-by-zero[] @textrm is not de-sir-able for R u ses and @texttt bounds-strict[] @textrm is an Underfull \hbox (badness 2384) in paragraph at lines 8886--8893 @textrm part of `@texttt -fsanitize=undefined[]@textrm '[], but can be spec-i-f ied sep-a-rately. It adds op-tions [102]. Underfull \hbox (badness 5878) in paragraph at lines 8921--8925 []@textrm For more de-tails on the topic see [][]@texttt http://blog.regehr.org /archives/213[][][] @textrm and Underfull \hbox (badness 10000) in paragraph at lines 8935--8942 []@textrm Recent ver-sions of @texttt clang[] @textrm on `@texttt x86_64[]@text rm '[] Linux have `Thread-San-i-tizer' Underfull \hbox (badness 4441) in paragraph at lines 8935--8942 @textrm ([][]@texttt https://code.google.com/p/thread-sanitizer/[][][]@textrm ) , a `data race de-tec-tor for C/C@texttt ++ Overfull \hbox (50.80455pt too wide) in paragraph at lines 8964--8964 []@texttt Fortran runtime error: Index '1' of dimension 1 of array 'x' above u pper bound of 0[] [103] [104] [105] [106] Chapter 5 [107] [108] [109] [110] [111] [112] [113] Underfull \hbox (badness 4505) in paragraph at lines 9865--9870 @textrm Without or with reg-is-tra-tion, these will both work. If @texttt R_ini t_mypkg[] @textrm calls @texttt R_ [114] [115] [116] Overfull \hbox (30.03963pt too wide) in paragraph at lines 10111--10111 []@smalltt y[accept] <- .Call("spline_value", knots, coeff, ord, x[accept], de riv, PACKAGE = "splines")[] [117] [118] [119] [120] [121] Overfull \hbox (61.1125pt too wide) in paragraph at lines 10552--10554 [][][]@smallrm For ex-am-ple, `@smalltt _GLIBCXX_USE_CXX11_ABI[]@smallrm '[] in @smalltt g++[] @smallrm 5.1 and later: [][]@smalltt https://gcc.gnu.org/online docs/libstdc++/manual/using_ [122] Overfull \hbox (16.31242pt too wide) in paragraph at lines 10691--10691 []@texttt PKG_LIBS=-L"$(PKGB_PATH)$(R_ARCH)" -Wl,-rpath,"$(PKGB_PATH)$(R_ARCH) " -lpackB[] [123] [124] [125] [126] [127] [128] [129] [130] [131] Underfull \hbox (badness 2781) in paragraph at lines 11452--11454 [][][]@smallrm You can as-sign a @smallit copy @smallrm of the ob-ject in the e n-vi-ron-ment frame @smalltt rho[] @smallrm us-ing @smalltt defineVar(symbol, [132] Underfull \hbox (badness 10000) in paragraph at lines 11534--11536 []@textrm Functions @texttt any_duplicated[] @textrm and @texttt any_duplicated 3[] @textrm are fast ver-sions of R's [133] [134] [135] [136] [137] [138] [139] [140] [141] [142] [143] [144] [145] Underfull \hbox (badness 10000) in paragraph at lines 12547--12552 []@textrm A toy ex-am-ple of the use of weak ref-er-ences can be found at Underfull \hbox (badness 10000) in paragraph at lines 12547--12552 [][]@texttt https://homepage.stat.uiowa.edu/~luke/R/references/weakfinex.html[] [][]@textrm , but Overfull \hbox (22.06111pt too wide) in paragraph at lines 12572--12572 [] @texttt ptr = R_MakeExternalPtr(thisHandle, install("RODBC_channel"), R_ NilValue);[] [146] [147] Chapter 6 [148] [149] [150] [151] [152] [153] [154] [155] [156] [157This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. ] [158]entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: [159 pdf,] fonts, [160] page headings, tables, conditionals, indexing, sectioning, Warning: unbalanced parentheses in @def... toc, environments, defuns, [161 macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization,] formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [162) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi)] [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map [163] [164] Underfull \hbox (badness 2689) in paragraph at lines 14255--14261 []@textrm The vis-i-bil-ity mech-a-nism is not avail-able on Win-dows, but ther e is an equally [165] [166] Underfull \hbox (badness 10000) in paragraph at lines 14383--14389 []@textrm The graph-ics sys-tems are ex-posed in head-ers `@texttt R_ext/Graphi csEngine.h[]@textrm '[], Underfull \hbox (badness 3240) in paragraph at lines 14383--14389 @textrm `@texttt R_ext/GraphicsDevice.h[]@textrm '[] (which it in-cludes) and ` @texttt R_ext/QuartzDevice.h[]@textrm '[]. Fa-cil-i- Chapter 7 [167] [168] Chapter 8 [169] [170]}] [171 [2] [-1] Chapter 1] Chapter 2 [1 Overfull \hbox (22.06111pt too wide) in paragraph at lines 14795--14795 []@texttt ## replace $(LIBR) $(LIBS) by $(STATIC_LIBR) if R was build with a s tatic libR[] [172]] [2 Overfull \hbox (33.55849pt too wide) in paragraph at lines 14854--14854 []@texttt extern int (*ptr_R_EditFiles)(int, const char **, const char **, co nst char *);[] [173]] Cross reference values unknown; you must run TeX again. [174] [175] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] Underfull \hbox (badness 10000) in paragraph at lines 15097--15104 @texttt internet/nanoftp.c[]@textrm '[], `@texttt src/modules/internet/nanohtt p.c[]@textrm '[] and `@texttt src/modules/ [176] [4 Underfull \hbox (badness 10000) in paragraph at lines 15221--15226 []@textrm Another (D)COM server, @texttt RDCOMServer[]@textrm , may be avail-a ble from Omega-hat, [177]] [178] [5 Underfull \hbox (badness 6284) in paragraph at lines 15357--15364 @textrm may be avail-able from the Win-dows Reg-istry: it will be in @texttt H KEY_LOCAL_ Underfull \hbox (badness 10000) in paragraph at lines 15357--15364 @texttt MACHINE\Software\R-core\R\InstallPath[] @textrm from an ad-min-is-tra- tive in-stall and Underfull \hbox (badness 3769) in paragraph at lines 15357--15364 @texttt HKEY_CURRENT_USER\Software\R-core\R\InstallPath[] @textrm oth-er-wise, if se-lected dur-ing [179]] [180] (Function and variable index) [6 [181] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.vrs] [7] Chapter 3 [8] [182 [9] [10]] [11] [12] [183 [13] [14]] [15]) [16 (Concept index)] [184 [17] [18]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-exts.cps [19] [20 [185] Chapter 4 [21]]) [186] [22 ) (see the transcript file for additional information)] [24] Chapter 5 [26]] [30] Chapter 6 [31] Output written on R-exts.pdf (192 pages, 1109778 bytes). Transcript written on R-exts.log. [32] [33] [34] [35] [36] [37] [38] Chapter 7 [39] Chapter 8 [40] [41] Chapter 9 [42] [43] Chapter 10 [44] [45] Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46] [47] [48] [49] [50] (Function and Variable Index) [51] (Concept Index) [52] Appendix A [53] [54] ) (see the transcript file for additional information)TEXINPUTS="../../.././doc/manual:$TEXINPUTS" LC_COLLATE=C /usr/bin/texi2dvi --texinfo="@set UseExternalXrefs " --pdf ../../.././doc/manual/R-intro.texi Output written on R-lang.pdf (57 pages, 291199 bytes). Transcript written on R-lang.log. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.t2d/pdf/xtr/R-lang.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.aux) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map}] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.toc [-1] [-2]) [-3] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.toc) Chapter 1 Chapter 2 [1] [2] Overfull \hbox (8.41086pt too wide) in paragraph at lines 293--294 @textbf storage.mode| [3] [4] [5] [6] [7] Chapter 3 [8] [9] [10] [11] [12] [13] [14] [15] [16] [17] [18] [19This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. ] [20] Chapter 4 [21entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]:] pdf, fonts, [22] [23 page headings,] tables, conditionals, indexing, sectioning, toc, environments, [24 defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex] This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, Chapter 5 [25 formatting, and turning on texinfo input format.)] (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex) [26) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map] [27] [28] [29] [30] Chapter 6 [31] [32] [33] [34]}] [2 [35] [-1] (Preface)] Cross reference values unknown; you must run TeX again. Chapter 1 [1] [36] [37 [2]] [38 [3] Chapter 7 [39]] [4] Chapter 8 [40 [5] [41]] Chapter 2 [6] Chapter 9 [42] [43 [7]] Chapter 10 [44] [8] [45] [9 Underfull \hbox (badness 10000) in paragraph at lines 4342--4344 []@textrm Up-to-date in-for-ma-tion on the cur-rently ac-cepted for-mats can be found by [46]] [10 [47]] [11 [48] Chapter 3 [12]] [49] [13] [50] [14 (Function and Variable Index) [51]] Chapter 4 [15] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.vrs [16] Chapter 5 [17 [52.]] [18)] (Concept Index) [53 [19] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.cps] [20]) [21 Appendix A [54]] [22 [55] ) (see the transcript file for additional information) [24]] [26] [27] [28] Output written on R-lang.pdf (60 pages, 408541 bytes). Transcript written on R-lang.log. Chapter 7 [29] [30] [31] Chapter 8 [32] [33] ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.aux) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map}] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.toc> [34] ] Chapter 6 [31 [35]] [32 [36]] ] [37] [38 [47] Chapter 9 [39]] [48 [40]] [49 Chapter 10 [41]] [50 [42]] (Function and Variable Index) [51] [43 (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.vrs] [44] [52 [45] [46]]) [47 (Concept Index) [53]] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-lang.cps [48] [49] Chapter 11 [50]) [51 Appendix A [54] [52]] [53 [55] ) (see the transcript file for additional information) [55 [56] [59 Output written on R-lang.pdf (60 pages, 408542 bytes). Transcript written on R-lang.log. ] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 6412--6415 @textrm and these can be ac-cessed from R via the pack-age [][]@textbf rggobi[] []@textrm , de-scribed at Chapter 13 [76] [77ERROR: 'pdflatex' needed but missing on your system. make[2]: *** [Makefile:269: fullrefman.pdf] Error 1 make[2]: *** Waiting for unfinished jobs.... ] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as `@texttt \\server\dir1\dir2\file[]@t extrm '[] and Underfull \hbox (badness 5189) in paragraph at lines 6647--6652 @textrm `@texttt \\?\UNC\server\dir1\dir2\file[]@textrm '[]) are not sup-porte d, but they may work in [80] Underfull \hbox (badness 10000) in paragraph at lines 6724--6728 []@textrm There is some con-fu-sion be-tween @texttt xz[] @textrm and @texttt l zma[] @textrm com-pres-sion (see Underfull \hbox (badness 10000) in paragraph at lines 6724--6728 [][]@texttt https://en.wikipedia.org/wiki/Xz[][][] @textrm and [][]@texttt http s://en.wikipedia.org/wiki/LZMA[][][]@textrm ): Appendix A [81] [82] [83] Appendix B [84] Underfull \hbox (badness 2635) in paragraph at lines 7023--7029 @textrm `@texttt --no-site-file[]@textrm '[] was given. The name of this file is taken from the value Underfull \hbox (badness 2158) in paragraph at lines 7023--7029 @textrm of the @texttt R_PROFILE[] @textrm en-vi-ron-ment vari-able. If that v ari-able is un-set, the de-fault [85] [86] [87] Underfull \hbox (badness 4752) in paragraph at lines 7295--7307 []@textrm In ad-di-tion, you can use op-tions `@texttt --arch=[]@textrm '[], `@ texttt --no-environ[]@textrm '[], `@texttt --no-init-file[]@textrm '[], [88] [89] [90] Appendix C [91] [92] Appendix D [93]Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Appendix E [94] Appendix F [95] [96] ) (see the transcript file for additional information) Output written on R-intro.pdf (99 pages, 555501 bytes). Transcript written on R-intro.log. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.aux) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map}] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 6412--6415 @textrm and these can be ac-cessed from R via the pack-age [][]@textbf rggobi[] []@textrm , de-scribed at Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as `@texttt \\server\dir1\dir2\file[]@t extrm '[] and Underfull \hbox (badness 5189) in paragraph at lines 6647--6652 @textrm `@texttt \\?\UNC\server\dir1\dir2\file[]@textrm '[]) are not sup-porte d, but they may work in [80] Underfull \hbox (badness 10000) in paragraph at lines 6724--6728 []@textrm There is some con-fu-sion be-tween @texttt xz[] @textrm and @texttt l zma[] @textrm com-pres-sion (see Underfull \hbox (badness 10000) in paragraph at lines 6724--6728 [][]@texttt https://en.wikipedia.org/wiki/Xz[][][] @textrm and [][]@texttt http s://en.wikipedia.org/wiki/LZMA[][][]@textrm ): Appendix A [81] [82] [83] Appendix B [84] Underfull \hbox (badness 2635) in paragraph at lines 7023--7029 @textrm `@texttt --no-site-file[]@textrm '[] was given. The name of this file is taken from the value Underfull \hbox (badness 2158) in paragraph at lines 7023--7029 @textrm of the @texttt R_PROFILE[] @textrm en-vi-ron-ment vari-able. If that v ari-able is un-set, the de-fault [85] [86] [87] Underfull \hbox (badness 4752) in paragraph at lines 7295--7307 []@textrm In ad-di-tion, you can use op-tions `@texttt --arch=[]@textrm '[], `@ texttt --no-environ[]@textrm '[], `@texttt --no-init-file[]@textrm '[], [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 700335 bytes). Transcript written on R-intro.log. This is pdfTeXk, Version 3.1415926-1.40.9 (Web2C 7.5.7) file:line:error style messages enabled. %&-line parsing enabled. entering extended mode (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.t2d/pdf/xtr/R-intro.texi (/usr/share/texmf-dist/tex/texinfo/texinfo.tex Loading texinfo [version 2008-04-18.10]: pdf, fonts, page headings, tables, conditionals, indexing, sectioning, toc, environments, defuns, macros, cross references, insertions, (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/epsf.tex This is `epsf.tex' v2.7.4 <14 February 2011> ) localization, formatting, and turning on texinfo input format.) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.aux) (/tmp/B.i0gomc/BUILD/R-3.6.0/doc/manual/R-defs.texi (/usr/share/texmf-dist/tex/texinfo/txi-en.tex)) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/version.texi) [1{/usr/share/texmf /fonts/map/pdftex/updmap/pdftex.map}] [2] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.toc [-1] [-2] [-3]) [-4] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.toc) (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.toc) (Preface) Chapter 1 [1] [2] [3] [4] [5] Chapter 2 [6] [7] [8] [9] [10] [11] Chapter 3 [12] [13] [14] Chapter 4 [15] [16] Chapter 5 [17] [18] [19] [20] [21] [22] [23] [24] Chapter 6 [25] [26] [27] [28] Chapter 7 [29] [30] [31] Chapter 8 [32] [33] [34] [35] [36] [37] [38] Chapter 9 [39] [40] Chapter 10 [41] [42] [43] [44] [45] [46] [47] [48] [49] Chapter 11 [50] [51] [52] [53] [54] [55] [56] [57] [58] [59] [60] [61] Chapter 12 [62] [63] [64] [65] [66] [67] [68] [69] [70] [71] [72] [73] [74] [75] Underfull \hbox (badness 10000) in paragraph at lines 6412--6415 @textrm and these can be ac-cessed from R via the pack-age [][]@textbf rggobi[] []@textrm , de-scribed at Chapter 13 [76] [77] Chapter 14 [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 6647--6652 []@textrm Windows' UNC filepaths (such as `@texttt \\server\dir1\dir2\file[]@t extrm '[] and Underfull \hbox (badness 5189) in paragraph at lines 6647--6652 @textrm `@texttt \\?\UNC\server\dir1\dir2\file[]@textrm '[]) are not sup-porte d, but they may work in [80] Underfull \hbox (badness 10000) in paragraph at lines 6724--6728 []@textrm There is some con-fu-sion be-tween @texttt xz[] @textrm and @texttt l zma[] @textrm com-pres-sion (see Underfull \hbox (badness 10000) in paragraph at lines 6724--6728 [][]@texttt https://en.wikipedia.org/wiki/Xz[][][] @textrm and [][]@texttt http s://en.wikipedia.org/wiki/LZMA[][][]@textrm ): Appendix A [81] [82] [83] Appendix B [84] Underfull \hbox (badness 2635) in paragraph at lines 7023--7029 @textrm `@texttt --no-site-file[]@textrm '[] was given. The name of this file is taken from the value Underfull \hbox (badness 2158) in paragraph at lines 7023--7029 @textrm of the @texttt R_PROFILE[] @textrm en-vi-ron-ment vari-able. If that v ari-able is un-set, the de-fault [85] [86] [87] Underfull \hbox (badness 4752) in paragraph at lines 7295--7307 []@textrm In ad-di-tion, you can use op-tions `@texttt --arch=[]@textrm '[], `@ texttt --no-environ[]@textrm '[], `@texttt --no-init-file[]@textrm '[], [88] [89] [90] Appendix C [91] [92] Appendix D [93] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.vrs [94] [95]) Appendix E [96] (/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual/R-intro.cps [97]) Appendix F [98] [99] ) (see the transcript file for additional information) Output written on R-intro.pdf (105 pages, 700338 bytes). Transcript written on R-intro.log. make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[1]: *** [Makefile:143: pdf] Error 2 make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make: [Makefile:226: pdf] Error 2 (ignored) Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' ../../../../library/splines/libs/splines.so is unchanged make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/splines' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' building package 'stats4' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' all.R is unchanged Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/stats4' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' building package 'tcltk' all.R is unchanged make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' ../../../../library/tcltk/libs/tcltk.so is unchanged make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk/src' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/tcltk' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' building package 'parallel' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' all.R is unchanged Warning: Your system is mis-configured: '/etc/localtime' is not a symlink Warning: It is strongly recommended to set envionment variable TZ to 'localtime' (or equivalent) Warning message: In as.POSIXlt.POSIXct(x, tz) : unknown timezone 'localtime' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[5]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' make[6]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' ../../../../library/parallel/libs/parallel.so is unchanged make[6]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' make[5]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel/src' make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[4]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[4]: Nothing to be done for 'mklazycomp'. make[4]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/parallel' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library/base' installing parsed NAMESPACE files make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tests' make[1]: Nothing to be done for 'R'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tests' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' creating doc/manual/R-admin.html creating doc/manual/R-data.html creating doc/manual/R-exts.html creating doc/manual/R-intro.html creating doc/manual/R-ints.html creating doc/manual/R-lang.html make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' installing parsed Rd make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' utils stats methods base graphics grDevices datasets grid tools tcltk splines stats4 compiler parallel make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' building/updating package metadata ... make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' writing package indices make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' + exit 0 Executing(%install): env -i TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp /bin/sh -e /tmp/B.i0gomc/BUILD/tmp/rpm-tmp.79539 TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp + umask 022 + cd /tmp/B.i0gomc/BUILD + /bin/rm '--interactive=never' -rf /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder + /bin/mkdir -p /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder + cd R-3.6.0 + rm -rf /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder + install -d /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/bin /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/man/man1 /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/include /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/applications /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/pixmaps + /usr/bin/make -j4 -C build -j1 install 'DESTDIR=/tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder' make: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/m4' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/m4' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tools' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tools' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' installing doc ... mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' installing doc/html ... mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/html make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/html' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' installing doc/manual ... mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/manual mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/manual/images make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc/manual' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/doc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/etc installing etc ... make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/etc' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' installing share ... mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/R mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/dictionaries mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/encodings mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/java mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/licenses mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/make mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/Rd mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/Rd/macros mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/sh mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/texmf mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/texmf/bibtex/bib mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/texmf/bibtex/bst mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/share/texmf/tex/latex make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/share' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/bin make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/scripts' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/include make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include/R_ext' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/include/R_ext make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include/R_ext' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/include' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/blas' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/blas' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tre' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/tzone' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/xdr' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/xdr' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/intl' make[3]: Nothing to be done for 'install'. make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra/intl' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/extra' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/appl' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[2]: Nothing to be done for 'install'. make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/nmath' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' i686-tld-linux-gcc -I. -I../../src/include -I../../.././src/include -DHAVE_CONFIG_H -O2 -fwrapv -pipe -Wformat -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -fstack-protector --param=ssp-buffer-size=4 -fomit-frame-pointer -march=i686 -fasynchronous-unwind-tables -mtune=pentium4 -Wl,--as-needed -Wl,--no-copy-dt-needed-entries -Wl,-z,relro -Wl,-z,combreloc -DR_HOME='"/usr/lib/R"' \ -o Rscript ../../.././src/unix/Rscript.c mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/pkgconfig make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/unix' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/bin/exec make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/lib make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/main' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/modules make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/internet' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/lapack' make[3]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[3]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules/X11' make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/modules' make[2]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' mkdir -p -- /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library installing packages ... building HTML index ... make[2]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src/library' make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/src' make[1]: Entering directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tests' make[1]: Nothing to be done for 'install'. make[1]: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build/tests' make: Leaving directory '/tmp/B.i0gomc/BUILD/R-3.6.0/build' + install /tmp/B.i0gomc/R.desktop /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/applications + install /tmp/B.i0gomc/R.xpm /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/pixmaps + ln -sf /usr/lib/R/lib/libR.so /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib + /bin/mv /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/include /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/include/R + ln -sf /usr/include/R /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/include + >R.files + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth + module=KernSmooth + echo '%dir /usr/lib/R/library/KernSmooth' + '[' KernSmooth '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/KernSmooth/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/INDEX + bf=INDEX + echo /usr/lib/R/library/KernSmooth/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/Meta + bf=Meta + echo /usr/lib/R/library/KernSmooth/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/KernSmooth/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/R + bf=R + echo /usr/lib/R/library/KernSmooth/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/help + bf=help + echo /usr/lib/R/library/KernSmooth/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/html + bf=html + echo /usr/lib/R/library/KernSmooth/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/libs + bf=libs + echo '%dir /usr/lib/R/library/KernSmooth/libs' + echo '%attr(755,root,root) /usr/lib/R/library/KernSmooth/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/po + bf=po + echo '%dir /usr/lib/R/library/KernSmooth/po' + gen_lang /usr/lib/R/library/KernSmooth/po + dir=/usr/lib/R/library/KernSmooth/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/KernSmooth/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/KernSmooth/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/KernSmooth/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/KernSmooth/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/KernSmooth/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/KernSmooth/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS + module=MASS + echo '%dir /usr/lib/R/library/MASS' + '[' MASS '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/CITATION + bf=CITATION + echo /usr/lib/R/library/MASS/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/MASS/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/INDEX + bf=INDEX + echo /usr/lib/R/library/MASS/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/Meta + bf=Meta + echo /usr/lib/R/library/MASS/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/MASS/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/NEWS + bf=NEWS + echo /usr/lib/R/library/MASS/NEWS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/R + bf=R + echo /usr/lib/R/library/MASS/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/data + bf=data + echo /usr/lib/R/library/MASS/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/help + bf=help + echo /usr/lib/R/library/MASS/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/html + bf=html + echo /usr/lib/R/library/MASS/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/libs + bf=libs + echo '%dir /usr/lib/R/library/MASS/libs' + echo '%attr(755,root,root) /usr/lib/R/library/MASS/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/po + bf=po + echo '%dir /usr/lib/R/library/MASS/po' + gen_lang /usr/lib/R/library/MASS/po + dir=/usr/lib/R/library/MASS/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/MASS/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/MASS/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/MASS/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/MASS/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/MASS/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/MASS/scripts + bf=scripts + echo /usr/lib/R/library/MASS/scripts + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix + module=Matrix + echo '%dir /usr/lib/R/library/Matrix' + '[' Matrix '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/Copyrights + bf=Copyrights + echo /usr/lib/R/library/Matrix/Copyrights + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/Matrix/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/Doxyfile + bf=Doxyfile + echo /usr/lib/R/library/Matrix/Doxyfile + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/INDEX + bf=INDEX + echo /usr/lib/R/library/Matrix/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/LICENCE + bf=LICENCE + echo /usr/lib/R/library/Matrix/LICENCE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/Meta + bf=Meta + echo /usr/lib/R/library/Matrix/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/Matrix/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/NEWS.Rd + bf=NEWS.Rd + echo /usr/lib/R/library/Matrix/NEWS.Rd + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/R + bf=R + echo /usr/lib/R/library/Matrix/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/data + bf=data + echo /usr/lib/R/library/Matrix/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/doc + bf=doc + echo /usr/lib/R/library/Matrix/doc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/external + bf=external + echo /usr/lib/R/library/Matrix/external + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/help + bf=help + echo /usr/lib/R/library/Matrix/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/html + bf=html + echo /usr/lib/R/library/Matrix/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/include + bf=include + echo /usr/lib/R/library/Matrix/include + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/libs + bf=libs + echo '%dir /usr/lib/R/library/Matrix/libs' + echo '%attr(755,root,root) /usr/lib/R/library/Matrix/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/po + bf=po + echo '%dir /usr/lib/R/library/Matrix/po' + gen_lang /usr/lib/R/library/Matrix/po + dir=/usr/lib/R/library/Matrix/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/Matrix/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/Matrix/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/Matrix/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/Matrix/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/Matrix/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/test-tools-1.R + bf=test-tools-1.R + echo /usr/lib/R/library/Matrix/test-tools-1.R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/test-tools-Matrix.R + bf=test-tools-Matrix.R + echo /usr/lib/R/library/Matrix/test-tools-Matrix.R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/Matrix/test-tools.R + bf=test-tools.R + echo /usr/lib/R/library/Matrix/test-tools.R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base + module=base + echo '%dir /usr/lib/R/library/base' + '[' base '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/CITATION + bf=CITATION + echo /usr/lib/R/library/base/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/base/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/INDEX + bf=INDEX + echo /usr/lib/R/library/base/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/Meta + bf=Meta + echo /usr/lib/R/library/base/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/R + bf=R + echo /usr/lib/R/library/base/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/demo + bf=demo + echo /usr/lib/R/library/base/demo + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/help + bf=help + echo /usr/lib/R/library/base/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/base/html + bf=html + echo /usr/lib/R/library/base/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot + module=boot + echo '%dir /usr/lib/R/library/boot' + '[' boot '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/CITATION + bf=CITATION + echo /usr/lib/R/library/boot/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/boot/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/INDEX + bf=INDEX + echo /usr/lib/R/library/boot/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/Meta + bf=Meta + echo /usr/lib/R/library/boot/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/boot/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/R + bf=R + echo /usr/lib/R/library/boot/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/bd.q + bf=bd.q + echo /usr/lib/R/library/boot/bd.q + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/data + bf=data + echo /usr/lib/R/library/boot/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/help + bf=help + echo /usr/lib/R/library/boot/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/html + bf=html + echo /usr/lib/R/library/boot/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po + bf=po + echo '%dir /usr/lib/R/library/boot/po' + gen_lang /usr/lib/R/library/boot/po + dir=/usr/lib/R/library/boot/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/boot/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/boot/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/boot/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/boot/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/boot/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/boot/po/ru + bd=ru + lang=ru + echo '%lang(ru) /usr/lib/R/library/boot/po/ru' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class + module=class + echo '%dir /usr/lib/R/library/class' + '[' class '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/CITATION + bf=CITATION + echo /usr/lib/R/library/class/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/class/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/INDEX + bf=INDEX + echo /usr/lib/R/library/class/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/Meta + bf=Meta + echo /usr/lib/R/library/class/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/class/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/NEWS + bf=NEWS + echo /usr/lib/R/library/class/NEWS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/R + bf=R + echo /usr/lib/R/library/class/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/help + bf=help + echo /usr/lib/R/library/class/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/html + bf=html + echo /usr/lib/R/library/class/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/libs + bf=libs + echo '%dir /usr/lib/R/library/class/libs' + echo '%attr(755,root,root) /usr/lib/R/library/class/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/po + bf=po + echo '%dir /usr/lib/R/library/class/po' + gen_lang /usr/lib/R/library/class/po + dir=/usr/lib/R/library/class/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/class/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/class/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/class/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/class/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/class/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/class/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster + module=cluster + echo '%dir /usr/lib/R/library/cluster' + '[' cluster '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/CITATION + bf=CITATION + echo /usr/lib/R/library/cluster/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/cluster/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/INDEX + bf=INDEX + echo /usr/lib/R/library/cluster/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/Meta + bf=Meta + echo /usr/lib/R/library/cluster/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/cluster/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/NEWS.Rd + bf=NEWS.Rd + echo /usr/lib/R/library/cluster/NEWS.Rd + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/R + bf=R + echo /usr/lib/R/library/cluster/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/data + bf=data + echo /usr/lib/R/library/cluster/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/help + bf=help + echo /usr/lib/R/library/cluster/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/html + bf=html + echo /usr/lib/R/library/cluster/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/libs + bf=libs + echo '%dir /usr/lib/R/library/cluster/libs' + echo '%attr(755,root,root) /usr/lib/R/library/cluster/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/po + bf=po + echo '%dir /usr/lib/R/library/cluster/po' + gen_lang /usr/lib/R/library/cluster/po + dir=/usr/lib/R/library/cluster/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/cluster/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/cluster/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/cluster/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/cluster/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/cluster/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/cluster/test-tools.R + bf=test-tools.R + echo /usr/lib/R/library/cluster/test-tools.R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools + module=codetools + echo '%dir /usr/lib/R/library/codetools' + '[' codetools '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/codetools/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/INDEX + bf=INDEX + echo /usr/lib/R/library/codetools/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/Meta + bf=Meta + echo /usr/lib/R/library/codetools/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/codetools/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/R + bf=R + echo /usr/lib/R/library/codetools/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/help + bf=help + echo /usr/lib/R/library/codetools/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/codetools/html + bf=html + echo /usr/lib/R/library/codetools/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/compiler + module=compiler + echo 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/tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/compiler/html + bf=html + echo /usr/lib/R/library/compiler/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets + module=datasets + echo '%dir /usr/lib/R/library/datasets' + '[' datasets '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/datasets/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/INDEX + bf=INDEX + echo /usr/lib/R/library/datasets/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/Meta + bf=Meta + echo /usr/lib/R/library/datasets/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/datasets/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/data + bf=data + echo /usr/lib/R/library/datasets/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/help + bf=help + echo /usr/lib/R/library/datasets/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/datasets/html + bf=html + echo /usr/lib/R/library/datasets/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign + module=foreign + echo '%dir /usr/lib/R/library/foreign' + '[' foreign '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/COPYRIGHTS + bf=COPYRIGHTS + echo /usr/lib/R/library/foreign/COPYRIGHTS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/foreign/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/INDEX + bf=INDEX + echo /usr/lib/R/library/foreign/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/Meta + bf=Meta + echo /usr/lib/R/library/foreign/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/foreign/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/R + bf=R + echo /usr/lib/R/library/foreign/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/files + bf=files + echo /usr/lib/R/library/foreign/files + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/help + bf=help + echo /usr/lib/R/library/foreign/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/html + bf=html + echo /usr/lib/R/library/foreign/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/libs + bf=libs + echo '%dir /usr/lib/R/library/foreign/libs' + echo '%attr(755,root,root) /usr/lib/R/library/foreign/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/po + bf=po + echo '%dir /usr/lib/R/library/foreign/po' + gen_lang /usr/lib/R/library/foreign/po + dir=/usr/lib/R/library/foreign/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/foreign/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/foreign/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/foreign/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/foreign/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/foreign/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices + module=grDevices + echo '%dir /usr/lib/R/library/grDevices' + '[' grDevices '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/grDevices/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/INDEX + bf=INDEX + echo /usr/lib/R/library/grDevices/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/Meta + bf=Meta + echo /usr/lib/R/library/grDevices/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/grDevices/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/R + bf=R + echo /usr/lib/R/library/grDevices/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/afm + bf=afm + echo /usr/lib/R/library/grDevices/afm + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/demo + bf=demo + echo /usr/lib/R/library/grDevices/demo + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/enc + bf=enc + echo /usr/lib/R/library/grDevices/enc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/help + bf=help + echo /usr/lib/R/library/grDevices/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/html + bf=html + echo /usr/lib/R/library/grDevices/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/icc + bf=icc + echo /usr/lib/R/library/grDevices/icc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grDevices/libs + bf=libs + echo '%dir /usr/lib/R/library/grDevices/libs' + echo '%attr(755,root,root) /usr/lib/R/library/grDevices/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics + module=graphics + echo '%dir /usr/lib/R/library/graphics' + '[' graphics '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/graphics/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/INDEX + bf=INDEX + echo /usr/lib/R/library/graphics/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/Meta + bf=Meta + echo /usr/lib/R/library/graphics/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/graphics/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/R + bf=R + echo /usr/lib/R/library/graphics/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/demo + bf=demo + echo /usr/lib/R/library/graphics/demo + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/help + bf=help + echo /usr/lib/R/library/graphics/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/html + bf=html + echo /usr/lib/R/library/graphics/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/graphics/libs + bf=libs + echo '%dir /usr/lib/R/library/graphics/libs' + echo '%attr(755,root,root) /usr/lib/R/library/graphics/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grid + module=grid + echo '%dir /usr/lib/R/library/grid' + '[' grid '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grid/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/grid/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/grid/INDEX + bf=INDEX + echo /usr/lib/R/library/grid/INDEX + basename 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/tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice + module=lattice + echo '%dir /usr/lib/R/library/lattice' + '[' lattice '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/CITATION + bf=CITATION + echo /usr/lib/R/library/lattice/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/lattice/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/INDEX + bf=INDEX + echo /usr/lib/R/library/lattice/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/Meta + bf=Meta + echo /usr/lib/R/library/lattice/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/lattice/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/NEWS + bf=NEWS + echo /usr/lib/R/library/lattice/NEWS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/R + bf=R + echo /usr/lib/R/library/lattice/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/data + bf=data + echo /usr/lib/R/library/lattice/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/demo + bf=demo + echo /usr/lib/R/library/lattice/demo + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/help + bf=help + echo /usr/lib/R/library/lattice/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/html + bf=html + echo /usr/lib/R/library/lattice/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/libs + bf=libs + echo '%dir /usr/lib/R/library/lattice/libs' + echo '%attr(755,root,root) /usr/lib/R/library/lattice/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/po + bf=po + echo '%dir /usr/lib/R/library/lattice/po' + gen_lang /usr/lib/R/library/lattice/po + dir=/usr/lib/R/library/lattice/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/lattice/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/lattice/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/lattice/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/lattice/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/lattice/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/lattice/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods + module=methods + echo '%dir /usr/lib/R/library/methods' + '[' methods '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/methods/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/INDEX + bf=INDEX + echo /usr/lib/R/library/methods/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/Meta + bf=Meta + echo /usr/lib/R/library/methods/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/methods/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/R + bf=R + echo /usr/lib/R/library/methods/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/help + bf=help + echo /usr/lib/R/library/methods/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/html + bf=html + echo /usr/lib/R/library/methods/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/methods/libs + bf=libs + echo '%dir /usr/lib/R/library/methods/libs' + echo '%attr(755,root,root) /usr/lib/R/library/methods/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv + module=mgcv + echo '%dir /usr/lib/R/library/mgcv' + '[' mgcv '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/CITATION + bf=CITATION + echo /usr/lib/R/library/mgcv/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/mgcv/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/INDEX + bf=INDEX + echo /usr/lib/R/library/mgcv/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/Meta + bf=Meta + echo /usr/lib/R/library/mgcv/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/mgcv/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/R + bf=R + echo /usr/lib/R/library/mgcv/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/data + bf=data + echo /usr/lib/R/library/mgcv/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/help + bf=help + echo /usr/lib/R/library/mgcv/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/html + bf=html + echo /usr/lib/R/library/mgcv/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/libs + bf=libs + echo '%dir /usr/lib/R/library/mgcv/libs' + echo '%attr(755,root,root) /usr/lib/R/library/mgcv/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/po + bf=po + echo '%dir /usr/lib/R/library/mgcv/po' + gen_lang /usr/lib/R/library/mgcv/po + dir=/usr/lib/R/library/mgcv/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/mgcv/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/mgcv/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/mgcv/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/mgcv/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/mgcv/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/mgcv/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme + module=nlme + echo '%dir /usr/lib/R/library/nlme' + '[' nlme '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/CITATION + bf=CITATION + echo /usr/lib/R/library/nlme/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/nlme/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/INDEX + bf=INDEX + echo /usr/lib/R/library/nlme/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/LICENCE + bf=LICENCE + echo /usr/lib/R/library/nlme/LICENCE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/Meta + bf=Meta + echo /usr/lib/R/library/nlme/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/nlme/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/R + bf=R + echo /usr/lib/R/library/nlme/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/data + bf=data + echo /usr/lib/R/library/nlme/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/help + bf=help + echo /usr/lib/R/library/nlme/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/html + bf=html + echo /usr/lib/R/library/nlme/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/libs + bf=libs + echo '%dir /usr/lib/R/library/nlme/libs' + echo '%attr(755,root,root) /usr/lib/R/library/nlme/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/mlbook + bf=mlbook + echo /usr/lib/R/library/nlme/mlbook + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/po + bf=po + echo '%dir /usr/lib/R/library/nlme/po' + gen_lang /usr/lib/R/library/nlme/po + dir=/usr/lib/R/library/nlme/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/nlme/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/nlme/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/nlme/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/nlme/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/nlme/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nlme/scripts + bf=scripts + echo /usr/lib/R/library/nlme/scripts + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet + module=nnet + echo '%dir /usr/lib/R/library/nnet' + '[' nnet '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/CITATION + bf=CITATION + echo /usr/lib/R/library/nnet/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/nnet/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/INDEX + bf=INDEX + echo /usr/lib/R/library/nnet/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/Meta + bf=Meta + echo /usr/lib/R/library/nnet/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/nnet/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/NEWS + bf=NEWS + echo /usr/lib/R/library/nnet/NEWS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/R + bf=R + echo /usr/lib/R/library/nnet/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/help + bf=help + echo /usr/lib/R/library/nnet/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/html + bf=html + echo /usr/lib/R/library/nnet/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/libs + bf=libs + echo '%dir /usr/lib/R/library/nnet/libs' + echo '%attr(755,root,root) /usr/lib/R/library/nnet/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/po + bf=po + echo '%dir /usr/lib/R/library/nnet/po' + gen_lang /usr/lib/R/library/nnet/po + dir=/usr/lib/R/library/nnet/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/nnet/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/nnet/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/nnet/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/nnet/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/nnet/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/nnet/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel + module=parallel + echo '%dir /usr/lib/R/library/parallel' + '[' parallel '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/parallel/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/INDEX + bf=INDEX + echo /usr/lib/R/library/parallel/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/Meta + bf=Meta + echo /usr/lib/R/library/parallel/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/parallel/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/R + bf=R + echo /usr/lib/R/library/parallel/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/doc + bf=doc + echo /usr/lib/R/library/parallel/doc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/help + bf=help + echo /usr/lib/R/library/parallel/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/html + bf=html + echo /usr/lib/R/library/parallel/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/parallel/libs + bf=libs + echo '%dir /usr/lib/R/library/parallel/libs' + echo '%attr(755,root,root) /usr/lib/R/library/parallel/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart + module=rpart + echo '%dir /usr/lib/R/library/rpart' + '[' rpart '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/rpart/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/INDEX + bf=INDEX + echo /usr/lib/R/library/rpart/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/Meta + bf=Meta + echo /usr/lib/R/library/rpart/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/rpart/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/NEWS.Rd + bf=NEWS.Rd + echo /usr/lib/R/library/rpart/NEWS.Rd + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/R + bf=R + echo /usr/lib/R/library/rpart/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/data + bf=data + echo /usr/lib/R/library/rpart/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/doc + bf=doc + echo /usr/lib/R/library/rpart/doc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/help + bf=help + echo /usr/lib/R/library/rpart/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/html + bf=html + echo /usr/lib/R/library/rpart/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/libs + bf=libs + echo '%dir /usr/lib/R/library/rpart/libs' + echo '%attr(755,root,root) /usr/lib/R/library/rpart/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po + bf=po + echo '%dir /usr/lib/R/library/rpart/po' + gen_lang /usr/lib/R/library/rpart/po + dir=/usr/lib/R/library/rpart/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/rpart/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/rpart/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/rpart/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/rpart/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/rpart/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/rpart/po/ru + bd=ru + lang=ru + echo '%lang(ru) /usr/lib/R/library/rpart/po/ru' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial + module=spatial + echo '%dir /usr/lib/R/library/spatial' + '[' spatial '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/CITATION + bf=CITATION + echo /usr/lib/R/library/spatial/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/spatial/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/INDEX + bf=INDEX + echo /usr/lib/R/library/spatial/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/Meta + bf=Meta + echo /usr/lib/R/library/spatial/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/spatial/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/NEWS + bf=NEWS + echo /usr/lib/R/library/spatial/NEWS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/PP.files + bf=PP.files + echo /usr/lib/R/library/spatial/PP.files + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/R + bf=R + echo /usr/lib/R/library/spatial/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/help + bf=help + echo /usr/lib/R/library/spatial/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/html + bf=html + echo /usr/lib/R/library/spatial/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/libs + bf=libs + echo '%dir /usr/lib/R/library/spatial/libs' + echo '%attr(755,root,root) /usr/lib/R/library/spatial/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/po + bf=po + echo '%dir /usr/lib/R/library/spatial/po' + gen_lang /usr/lib/R/library/spatial/po + dir=/usr/lib/R/library/spatial/po + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/po/de + bd=de + lang=de + echo '%lang(de) /usr/lib/R/library/spatial/po/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/po/en@quot + bd=en@quot + lang=en + echo '%lang(en) /usr/lib/R/library/spatial/po/en@quot' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/po/fr + bd=fr + lang=fr + echo '%lang(fr) /usr/lib/R/library/spatial/po/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/po/ko + bd=ko + lang=ko + echo '%lang(ko) /usr/lib/R/library/spatial/po/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/po/pl + bd=pl + lang=pl + echo '%lang(pl) /usr/lib/R/library/spatial/po/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/spatial/ppdata + bf=ppdata + echo /usr/lib/R/library/spatial/ppdata + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines + module=splines + echo '%dir /usr/lib/R/library/splines' + '[' splines '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/splines/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/INDEX + bf=INDEX + echo /usr/lib/R/library/splines/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/Meta + bf=Meta + echo /usr/lib/R/library/splines/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/splines/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/R + bf=R + echo /usr/lib/R/library/splines/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/help + bf=help + echo /usr/lib/R/library/splines/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/html + bf=html + echo /usr/lib/R/library/splines/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/splines/libs + bf=libs + echo '%dir /usr/lib/R/library/splines/libs' + echo '%attr(755,root,root) /usr/lib/R/library/splines/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats + module=stats + echo '%dir /usr/lib/R/library/stats' + '[' stats '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/COPYRIGHTS.modreg + bf=COPYRIGHTS.modreg + echo /usr/lib/R/library/stats/COPYRIGHTS.modreg + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/stats/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/INDEX + bf=INDEX + echo /usr/lib/R/library/stats/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/Meta + bf=Meta + echo /usr/lib/R/library/stats/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/stats/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/R + bf=R + echo /usr/lib/R/library/stats/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/SOURCES.ts + bf=SOURCES.ts + echo /usr/lib/R/library/stats/SOURCES.ts + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/demo + bf=demo + echo /usr/lib/R/library/stats/demo + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/help + bf=help + echo /usr/lib/R/library/stats/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/html + bf=html + echo /usr/lib/R/library/stats/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats/libs + bf=libs + echo '%dir /usr/lib/R/library/stats/libs' + echo '%attr(755,root,root) /usr/lib/R/library/stats/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4 + module=stats4 + echo '%dir /usr/lib/R/library/stats4' + '[' stats4 '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/stats4/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/INDEX + bf=INDEX + echo /usr/lib/R/library/stats4/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/Meta + bf=Meta + echo /usr/lib/R/library/stats4/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/stats4/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/R + bf=R + echo /usr/lib/R/library/stats4/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/help + bf=help + echo /usr/lib/R/library/stats4/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/stats4/html + bf=html + echo /usr/lib/R/library/stats4/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival + module=survival + echo '%dir /usr/lib/R/library/survival' + '[' survival '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/CITATION + bf=CITATION + echo /usr/lib/R/library/survival/CITATION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/COPYRIGHTS + bf=COPYRIGHTS + echo /usr/lib/R/library/survival/COPYRIGHTS + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/survival/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/INDEX + bf=INDEX + echo /usr/lib/R/library/survival/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/Meta + bf=Meta + echo /usr/lib/R/library/survival/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/survival/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/NEWS.Rd + bf=NEWS.Rd + echo /usr/lib/R/library/survival/NEWS.Rd + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/R + bf=R + echo /usr/lib/R/library/survival/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/data + bf=data + echo /usr/lib/R/library/survival/data + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/doc + bf=doc + echo /usr/lib/R/library/survival/doc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/help + bf=help + echo /usr/lib/R/library/survival/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/html + bf=html + echo /usr/lib/R/library/survival/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/survival/libs + bf=libs + echo '%dir /usr/lib/R/library/survival/libs' + echo '%attr(755,root,root) /usr/lib/R/library/survival/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk + module=tcltk + echo '%dir /usr/lib/R/library/tcltk' + '[' tcltk '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/tcltk/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/INDEX + bf=INDEX + echo /usr/lib/R/library/tcltk/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/Meta + bf=Meta + echo /usr/lib/R/library/tcltk/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/tcltk/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/R + bf=R + echo /usr/lib/R/library/tcltk/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/demo + bf=demo + echo /usr/lib/R/library/tcltk/demo + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/exec + bf=exec + echo /usr/lib/R/library/tcltk/exec + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/help + bf=help + echo /usr/lib/R/library/tcltk/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/html + bf=html + echo /usr/lib/R/library/tcltk/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tcltk/libs + bf=libs + echo '%dir /usr/lib/R/library/tcltk/libs' + echo '%attr(755,root,root) /usr/lib/R/library/tcltk/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools + module=tools + echo '%dir /usr/lib/R/library/tools' + '[' tools '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/tools/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/INDEX + bf=INDEX + echo /usr/lib/R/library/tools/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/Meta + bf=Meta + echo /usr/lib/R/library/tools/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/tools/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/R + bf=R + echo /usr/lib/R/library/tools/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/help + bf=help + echo /usr/lib/R/library/tools/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/html + bf=html + echo /usr/lib/R/library/tools/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/tools/libs + bf=libs + echo '%dir /usr/lib/R/library/tools/libs' + echo '%attr(755,root,root) /usr/lib/R/library/tools/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations + module=translations + echo '%dir /usr/lib/R/library/translations' + '[' translations '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/translations/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/da + bf=da + echo '%lang(da) /usr/lib/R/library/translations/da' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/de + bf=de + echo '%lang(de) /usr/lib/R/library/translations/de' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/en + bf=en + echo /usr/lib/R/library/translations/en + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/en@quot + bf=en@quot + echo /usr/lib/R/library/translations/en@quot + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/en_GB + bf=en_GB + echo '%lang(en_GB) /usr/lib/R/library/translations/en_GB' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/es + bf=es + echo '%lang(es) /usr/lib/R/library/translations/es' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/fa + bf=fa + echo '%lang(fa) /usr/lib/R/library/translations/fa' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/fr + bf=fr + echo '%lang(fr) /usr/lib/R/library/translations/fr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/it + bf=it + echo '%lang(it) /usr/lib/R/library/translations/it' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/ja + bf=ja + echo '%lang(ja) /usr/lib/R/library/translations/ja' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/ko + bf=ko + echo '%lang(ko) /usr/lib/R/library/translations/ko' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/nn + bf=nn + echo '%lang(nn) /usr/lib/R/library/translations/nn' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/pl + bf=pl + echo '%lang(pl) /usr/lib/R/library/translations/pl' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/pt_BR + bf=pt_BR + echo '%lang(pt_BR) /usr/lib/R/library/translations/pt_BR' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/ru + bf=ru + echo '%lang(ru) /usr/lib/R/library/translations/ru' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/tr + bf=tr + echo '%lang(tr) /usr/lib/R/library/translations/tr' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/zh_CN + bf=zh_CN + echo '%lang(zh_CN) /usr/lib/R/library/translations/zh_CN' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/translations/zh_TW + bf=zh_TW + echo '%lang(zh_TW) /usr/lib/R/library/translations/zh_TW' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils + module=utils + echo '%dir /usr/lib/R/library/utils' + '[' utils '=' translations ']' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/DESCRIPTION + bf=DESCRIPTION + echo /usr/lib/R/library/utils/DESCRIPTION + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/INDEX + bf=INDEX + echo /usr/lib/R/library/utils/INDEX + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/Meta + bf=Meta + echo /usr/lib/R/library/utils/Meta + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/NAMESPACE + bf=NAMESPACE + echo /usr/lib/R/library/utils/NAMESPACE + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/R + bf=R + echo /usr/lib/R/library/utils/R + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/Sweave + bf=Sweave + echo /usr/lib/R/library/utils/Sweave + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/doc + bf=doc + echo /usr/lib/R/library/utils/doc + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/help + bf=help + echo /usr/lib/R/library/utils/help + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/html + bf=html + echo /usr/lib/R/library/utils/html + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/iconvlist + bf=iconvlist + echo /usr/lib/R/library/utils/iconvlist + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/libs + bf=libs + echo '%dir /usr/lib/R/library/utils/libs' + echo '%attr(755,root,root) /usr/lib/R/library/utils/libs/*.so' + basename /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/library/utils/misc + bf=misc + echo /usr/lib/R/library/utils/misc + /bin/rm '--interactive=never' /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/COPYING + /bin/rm '--interactive=never' /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/AUTHORS /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/COPYRIGHTS /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/FAQ /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/NEWS.rds /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/THANKS + /bin/rm '--interactive=never' /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/lib/R/doc/NEWS.pdf + __spec_install_post_strip + set +x Stripping 3 ELF executables...DONE Stripping 29 ELF shared libraries...DONE + __spec_install_post_chrpath + set +x Remove RPATH/RUNPATH from 32 executable binaries and shared object files. + __spec_install_post_check_so + set +x Searching for shared objects with unresolved symbols... DONE + __spec_install_post_check_tmpfiles + set +x Checking /var/run <-> tmpfiles.d completeness... DONE + __spec_install_post_compress_docs + set +x Compress man pages: /usr/share/man + __spec_install_post_compress_modules + set +x + __spec_install_post_py_hardlink + set +x Processing files: R-3.6.0-3 Executing(%doc): env -i TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp /bin/sh -e /tmp/B.i0gomc/BUILD/tmp/rpm-tmp.37228 + umask 022 + cd /tmp/B.i0gomc/BUILD + cd R-3.6.0 + DOCDIR=/tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/doc/R-3.6.0 + export DOCDIR + rm -rf /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/doc/R-3.6.0 + /bin/mkdir -p /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/doc/R-3.6.0 + /usr/lib/rpm/compress-doc Compressing documentation in /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/doc/R-3.6.0... Documentation compressed. + cp -pr README doc/AUTHORS doc/COPYRIGHTS doc/FAQ doc/NEWS doc/NEWS.0 doc/NEWS.1 doc/NEWS.2 doc/RESOURCES doc/THANKS /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/doc/R-3.6.0 + /usr/lib/rpm/compress-doc Compressing documentation in /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder/usr/share/doc/R-3.6.0... ./NEWS.2 ./AUTHORS ./README ./FAQ ./NEWS.0 ./COPYRIGHTS ./NEWS ./RESOURCES ./THANKS ./NEWS.1 Documentation compressed. + exit 0 Provides: KernSmooth.so MASS.so Matrix.so R_X11.so R_de.so cairo.so class.so cluster.so foreign.so grDevices.so graphics.so grid.so internet.so lapack.so lattice.so libR.so methods.so mgcv.so nlme.so nnet.so parallel.so pkgconfig(libR) = 3.6.0 rpart.so spatial.so splines.so stats.so survival.so tcltk.so tools.so utils.so Requires(interp): /sbin/ldconfig /sbin/ldconfig Requires(rpmlib): rpmlib(VersionedDependencies) <= 3.0.3-1 Requires(post): /sbin/ldconfig perl-base textutils Requires(postun): /sbin/ldconfig Requires: /bin/sh ld-linux.so.2 ld-linux.so.2(GLIBC_2.1) libR.so libX11.so.6 libXmu.so.6 libXt.so.6 libblas.so.3 libbz2.so.1 libc.so.6 libc.so.6(GLIBC_2.0) libc.so.6(GLIBC_2.1) libc.so.6(GLIBC_2.1.3) libc.so.6(GLIBC_2.11) libc.so.6(GLIBC_2.15) libc.so.6(GLIBC_2.16) libc.so.6(GLIBC_2.17) libc.so.6(GLIBC_2.2) libc.so.6(GLIBC_2.27) libc.so.6(GLIBC_2.28) libc.so.6(GLIBC_2.3) libc.so.6(GLIBC_2.3.4) libc.so.6(GLIBC_2.4) libc.so.6(GLIBC_2.6) libc.so.6(GLIBC_2.7) libc.so.6(GLIBC_2.8) libcairo.so.2 libcurl.so.4 libdl.so.2 libdl.so.2(GLIBC_2.0) libdl.so.2(GLIBC_2.1) libgobject-2.0.so.0 libgomp.so.1 libgomp.so.1(GOMP_1.0) libgomp.so.1(GOMP_4.0) libgomp.so.1(GOMP_4.5) libgomp.so.1(OMP_1.0) libicui18n.so.65 libicuuc.so.65 libjpeg.so.8 libjpeg.so.8(LIBJPEG_8.0) liblapack.so.3 liblzma.so.5 liblzma.so.5(XZ_5.0) libm.so.6 libm.so.6(GLIBC_2.0) libm.so.6(GLIBC_2.1) libm.so.6(GLIBC_2.23) libm.so.6(GLIBC_2.29) libpango-1.0.so.0 libpangocairo-1.0.so.0 libpcre.so.1 libpng16.so.16 libpng16.so.16(PNG16_0) libpthread.so.0 libpthread.so.0(GLIBC_2.0) libpthread.so.0(GLIBC_2.2) libreadline.so.8 libtcl8.6.so.0 libtiff.so.5 libtk8.6.so.0 libz.so.1 rtld(GNU_HASH) Obsoletes: R-base R-contrib R-recommended Processing files: R-java-tools-3.6.0-3 Checking for unpackaged file(s): /usr/lib/rpm/check-files /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder warning: Installed (but unpackaged) file(s) found: /usr/lib/R/doc/html/Rlogo.pdf Wrote: /tmp/B.i0gomc/RPMS/R-3.6.0-3.i686.rpm Wrote: /tmp/B.i0gomc/RPMS/R-java-tools-3.6.0-3.i686.rpm Executing(%clean): env -i TMP=/home/users/builder/tmp HOME=/home/users/builder PATH=/usr/local/bin:/usr/bin:/bin:/usr/X11R6/bin:/home/users/builder/bin TMPDIR=/tmp/B.i0gomc/BUILD/tmp /bin/sh -e /tmp/B.i0gomc/BUILD/tmp/rpm-tmp.53297 + umask 022 + cd /tmp/B.i0gomc/BUILD + cd R-3.6.0 + /bin/rm '--interactive=never' -rf /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder + rm -rf /tmp/B.i0gomc/BUILD/tmp/R-3.6.0-root-builder ended at: Sat Oct 19 01:32:15 2019, done in 0:10:24.509150 + chmod -R u+rwX /tmp/B.i0gomc/BUILD + rm -rf /tmp/B.i0gomc/tmp /tmp/B.i0gomc/BUILD copy rpm files to cache_dir: /spools/ready Creating pndir index of /spools/ready/ (type=dir)... Loading [pndir]previous /spools/ready/packages.ndir.gz... Loading [dir]/spools/ready/... 200..400..600..614 Writing /spools/ready/packages.ndir.gz... Begin-TLD-Builder-Info upgrading packages End-TLD-Builder-Info + rm -rf /tmp/B.i0gomc Begin-TLD-Builder-Info Build-Time: user:679.72s sys:32.44s real:625.96s (faults io:13 non-io:13218015) Files queued for ftp: 9310 R-java-tools-3.6.0-3.i686.rpm 40113723 R-3.6.0-3.i686.rpm 102 R-3.6.0-3.src.rpm.uploadinfo warning: Installed (but unpackaged) file(s) found: /usr/lib/R/doc/html/Rlogo.pdf End-TLD-Builder-Info